PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62036065-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 370aa MW: 40753.5 Da PI: 9.4861

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62036065-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	8	28	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H AUR62036065-RA 8 CEICGKGFQRDQNLQLHRRGH 28 *******************88 PP
2	zf-C2H2	13.8	0.00017	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ AUR62036065-RA 82 WKCEKCNKKYAVQSDWKAHSKTC 104 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EPRKRVYVCP EKSCVHHHPS 60 RALGDLTGIK KHFCRKHGEK KWKCEKCNKK YAVQSDWKAH SKTCGTREYK CDCGTIFSRR 120 DSFITHRAFC DALAEETARM NAASTHFNLN AAVASNNNLN YHHMMGSNIG PAVAMAQHFS 180 SIFRPLSSST KDEIALDQHQ NQRGGVFPLW LGNQLTQPGG GIHHQTSPNN SSHIMSATAL 240 LYKAAQMGST SSTNTNDAFF DGNFGLVKEN NNEIDHNNFN RSGSVFGTSN STTTNAGSDV 300 EGSVDDLSTM TTMYTPNPAK RQKLVNDHVD SHTQRGVGVG SGGQTRDFLG VGSQPAAVCQ 360 QPSSVNGWI*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EPRKRVYVCP EKSCVHHHPS  60
RALGDLTGIK KHFCRKHGEK KWKCEKCNKK YAVQSDWKAH SKTCGTREYK CDCGTIFSRR  120
DSFITHRAFC DALAEETARM NAASTHFNLN AAVASNNNLN YHHMMGSNIG PAVAMAQHFS  180
SIFRPLSSST KDEIALDQHQ NQRGGVFPLW LGNQLTQPGG GIHHQTSPNN SSHIMSATAL  240
LYKAAQMGST SSTNTNDAFF DGNFGLVKEN NNEIDHNNFN RSGSVFGTSN STTTNAGSDV  300
EGSVDDLSTM TTMYTPNPAK RQKLVNDHVD SHTQRGVGVG SGGQTRDFLG VGSQPAAVCQ  360
QPSSVNGWI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	7e-98	C2H2 family protein