PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62037552-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 667aa MW: 77133.3 Da PI: 8.8447

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62037552-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.4	4.3e-22	47	139	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn.Hela 90 +fY+ YAk GF +r++++++sk +g+ t++++ C++eg+re ++ + +++r+++a+tr+gC+a++ k ++ ++ w+v++++ eHn H+l AUR62037552-RA 47 QFYKMYAKVKGFGIRRKHTTTSKIDGHPTSQKLWCNREGFREAKHLNrPDRKRKEKAVTRCGCNASISFKWDHrSDSWYVKDFVPEHNgHDLI 139 6***************************************999886789999*************999************78775 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
METGGEEVVD IEINNQDQAD CFESELEDFT LAEMKQLSFR SHRTCIQFYK MYAKVKGFGI 60 RRKHTTTSKI DGHPTSQKLW CNREGFREAK HLNRPDRKRK EKAVTRCGCN ASISFKWDHR 120 SDSWYVKDFV PEHNGHDLIP MNQMYFERYT RDDHDGIDKM FWCDGICQAY YKAFGKVIGF 180 DTTYKVNAYQ KPFVVVVGVN HHRKTVPLGV ALIANETTDT YIWVLEQLKE AGGNVAPYTF 240 ITDGDKAMAA AITEVFPRAH HRLCLCHLMR NIKGHTNKRF CSGFMKCVDG ARTQAEFEEA 300 WEDLMKAYVA LRDKKWAQDL YKDKEKWAEA FMVGQFYAGM RSTQRCESMN STLKTVITSK 360 IMLYRFVELY DQVLEHIRFE EDKDDYISTH TFPVITGVLP EIKTQAARTY TWNMYKLFLK 420 ELNFESGHIM TKTKEEKGHR DGASTTFWLN DCVNKDCNYV VCYNKKLQQM VCCCMKYNSI 480 GLPCRHMFAV MKFTGMVEIP SGCILRRWTI RDKVHVKNTF KDHDFQKRND HASANGRYAF 540 LTGLSAQLCR MVSSSYDRST WVRDKLAKML LEIENEKINP KDKDIIKDQK VKKGKSRGRP 600 KKSEVKTTGN ENIDQGVPFI GHDVHDITHV VRNVAATSET NPSPVKSGGF VELLKNFLPR 660 TYNTGD*

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

METGGEEVVD IEINNQDQAD CFESELEDFT LAEMKQLSFR SHRTCIQFYK MYAKVKGFGI  60
RRKHTTTSKI DGHPTSQKLW CNREGFREAK HLNRPDRKRK EKAVTRCGCN ASISFKWDHR  120
SDSWYVKDFV PEHNGHDLIP MNQMYFERYT RDDHDGIDKM FWCDGICQAY YKAFGKVIGF  180
DTTYKVNAYQ KPFVVVVGVN HHRKTVPLGV ALIANETTDT YIWVLEQLKE AGGNVAPYTF  240
ITDGDKAMAA AITEVFPRAH HRLCLCHLMR NIKGHTNKRF CSGFMKCVDG ARTQAEFEEA  300
WEDLMKAYVA LRDKKWAQDL YKDKEKWAEA FMVGQFYAGM RSTQRCESMN STLKTVITSK  360
IMLYRFVELY DQVLEHIRFE EDKDDYISTH TFPVITGVLP EIKTQAARTY TWNMYKLFLK  420
ELNFESGHIM TKTKEEKGHR DGASTTFWLN DCVNKDCNYV VCYNKKLQQM VCCCMKYNSI  480
GLPCRHMFAV MKFTGMVEIP SGCILRRWTI RDKVHVKNTF KDHDFQKRND HASANGRYAF  540
LTGLSAQLCR MVSSSYDRST WVRDKLAKML LEIENEKINP KDKDIIKDQK VKKGKSRGRP  600
KKSEVKTTGN ENIDQGVPFI GHDVHDITHV VRNVAATSET NPSPVKSGGF VELLKNFLPR  660
TYNTGD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	102	RKRKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	8e-58	FAR1 family protein