PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62037899-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 640aa MW: 70801.6 Da PI: 6.9886

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62037899-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.5	7.1e-18	199	286	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W++ + +L++a++e+ ++l+rg+l++ +Weev+ + r + ++s +qCk+k +nl+kryk +++++++ ++s++p+f+++ea AUR62037899-RA 199 EWSDTAIECLLDAYTEKYTQLNRGNLRGRDWEEVAVIVseRCENQHKSVEQCKNKVDNLKKRYKLERHRMSSA-GVAVSHWPWFKKMEA 286 5***********************************76777889*********************97.66777******95 PP

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence
MLQQIFKAKY FKYSDFCGAA RCFDPSYTWR SIWGAKSLLL EGLKWRVGNG SSIKVWEDEW 60 LVGDGSNSIP TIQLHCDIDM WVSELIDFDN MCWNSDLVAT TFCEVSNDVV KISGADGTSD 120 NGVVYEVTYE PSEFDPVPDL ESDPNPTINI MTDSTEKRKE IDRDDVSEGS YKKSKLAVIA 180 GAGGGGISGA GEYRKDREEW SDTAIECLLD AYTEKYTQLN RGNLRGRDWE EVAVIVSERC 240 ENQHKSVEQC KNKVDNLKKR YKLERHRMSS AGVAVSHWPW FKKMEAIVGN SVSSKSVSDD 300 DKVSGSSGSA TRQPKRYSVG TPGSLGQVNN MKSKSIPNLK WQRVVFKISG AALVGNGPHN 360 IDPKVVMLIA REVTVACRLG VQVAIVIGGR NFFCGDTWIT ATGADRSTTY HIGLNYIYLN 420 VKSHSQARSL NLSSCLKCYM VMNYFVSHQL LTLVSMMATV MNSVLLQSAL EKMGVQTRLQ 480 TAFAMSEVGE PYNRQKAIRH LEKGRVVIFG GVGGGSGNPL FSTDTTAALR ATDRMTLSFP 540 VILLKNNVSE SLLIAFWGCC VWFTVAITAW FMSYVWYFVP FLTVNAQAVL KGTNVDVVYD 600 CNSSGVTFEH ISFREAASRG PSSMDMMAMT FCEENAIPG*

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence

MLQQIFKAKY FKYSDFCGAA RCFDPSYTWR SIWGAKSLLL EGLKWRVGNG SSIKVWEDEW  60
LVGDGSNSIP TIQLHCDIDM WVSELIDFDN MCWNSDLVAT TFCEVSNDVV KISGADGTSD  120
NGVVYEVTYE PSEFDPVPDL ESDPNPTINI MTDSTEKRKE IDRDDVSEGS YKKSKLAVIA  180
GAGGGGISGA GEYRKDREEW SDTAIECLLD AYTEKYTQLN RGNLRGRDWE EVAVIVSERC  240
ENQHKSVEQC KNKVDNLKKR YKLERHRMSS AGVAVSHWPW FKKMEAIVGN SVSSKSVSDD  300
DKVSGSSGSA TRQPKRYSVG TPGSLGQVNN MKSKSIPNLK WQRVVFKISG AALVGNGPHN  360
IDPKVVMLIA REVTVACRLG VQVAIVIGGR NFFCGDTWIT ATGADRSTTY HIGLNYIYLN  420
VKSHSQARSL NLSSCLKCYM VMNYFVSHQL LTLVSMMATV MNSVLLQSAL EKMGVQTRLQ  480
TAFAMSEVGE PYNRQKAIRH LEKGRVVIFG GVGGGSGNPL FSTDTTAALR ATDRMTLSFP  540
VILLKNNVSE SLLIAFWGCC VWFTVAITAW FMSYVWYFVP FLTVNAQAVL KGTNVDVVYD  600
CNSSGVTFEH ISFREAASRG PSSMDMMAMT FCEENAIPG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	1e-147	Trihelix family protein