PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62038439-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 255aa MW: 27565.8 Da PI: 7.736

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62038439-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.5	6.3e-40	31	131	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael AUR62038439-RA 31 PCGACKFLRRKCTNGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPMNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVATLQAEL 125 7*********************9989*************************************************************** PP DUF260 95 allkee 100 a+++++ AUR62038439-RA 126 AMVQSQ 131 9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MPDHHDGRRK LGKRASATAA ASGDQEGPLA PCGACKFLRR KCTNGCIFAP HFGSDQGAAR 60 FAAVHKVFGA SNVSKLLLHI PMNRRQDAVV TISYEAQARL SDPVYGCVST ILALQQQVAT 120 LQAELAMVQS QVINSRLAMA NALQTSQQQL GNGYEVMHLP HNHHVHHQPA YSNNSSASNN 180 LLNMNTSATT TGHVSSTYNN DFSAVADAST APSPHSLDLL RLSRPSQDDD EDDEQISRNH 240 IAFANHLIHR FNII*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	4e-60	LBD family protein