PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62038483-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 1283aa MW: 142968 Da PI: 8.5913

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62038483-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	1167	1192	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C+ C ++F++k +L +H ++ + AUR62038483-RA 1167 YRCSreGCQMTFRTKVDLSSHKNNkC 1192 99*******************99874 PP
2	zf-C2H2	11.2	0.0012	1191	1214	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 kC+ Cgk F+++ + + H+r+H AUR62038483-RA 1191 KCHqrGCGKKFRSHKSVVLHQRVH 1214 7*********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 1283 aa Download sequence
MGNVVLPKWL KELPLAPEFR PTDTEFADPI AYISKIEKEV GAFGICKVIP PLSKPSKRYV 60 FDKLNKTLLR TRELGLDVNL KETVDSSMRV NQDKKHEVEN RAVFTTRQQE LGKDAKRGKG 120 GVDMSQPAAQ KQVWQSGELY TLEQFESKSK AFSRSVLGSV KEVTPLTIEA LFWKAASEKP 180 IYIEYANDVP GSGFGEPEGF SGHFRACNKR KRMCGPSPGG RSYLRQQGVN KEAIPCAGVE 240 GEELVPSSSP LEELEKKLIN LEEASSPDDI PQFTKQRDLC ADAELEGTAG WKLSNCLWNL 300 QVIARSAGSL TRFMLDDIPG VTSPMVYIGM LFSWFAWHVE DHELHSLNFL HTGSPKTWYA 360 IPGEHAFAFE DVIRKQAYGG DMDHLAALKI LGEKTTLFSP EMVVASGIPC CRLVQNPGEF 420 VVTFPRAYHL GFSHGFNCGE AANFGTPQWL TIAKEAAVRR AVMDHLPMLS HQQLLYLLTM 480 SFVLRVPRTM LPGARSSRLR NRLKEERELM VKKAFIEDVL KENHLLNTLL GKESAFRAVL 540 WHPDSLPSFA RYSKVGTIVD AAPIKGVDMS VLPYKGVNED NIPLTSHRKT PNALCLDSNG 600 ILCDFQVDSG TLVCVACGIL GYPIMSVVQP SKKASMENLS AVKTNVSGVV DISRQPDSRH 660 IQCSTKIFSP ETNDDETWDT SGFMRPRIFC LEHAVKIEGL LRPKGGAKML VICHSDYQKY 720 KANAVAVAEE LRTSFNYKEV RFDSVSQEEL NLIDIAIDEK LNDFEDWTSK LGINLRFSVK 780 TRKDSLPKKM EHALNIDYLL SIMAPDSRIS YIKWGSRKSR TKQKSNCRTL ATNCNGNLSK 840 KDEIIHVTSS MESKGKILLQ YSRRKYRTTT RTFTGAKHAS ECSLACPTGV TDADRGKVND 900 HSEDIPGTSC FKSLEKRFEV CGEVEAPALN RDPVINEALA SASSVSNVLR ISGETDNINE 960 HLDAENCSSL IGSAGISSSA RKEVGGEYGF MAKASGHAML CIPEELNDDQ ITVNSFPDNS 1020 CNNLEVYATA ANNAGESEPC KHGTTTVEVD MHILPKDNLT GNSQTGGCAS SLLSLQEKQE 1080 IKLATAKMTS RDGSKRRRKV VLQTEAHKNF IKSPCEGLRP RKNRNDLVHT PDSNVAELKE 1140 EKPPTKKLKK SSGRASCNQV LDNKTSYRCS REGCQMTFRT KVDLSSHKNN KCHQRGCGKK 1200 FRSHKSVVLH QRVHDDERPL KCSWTGCTMT FKWAWARTEH MRLHTGERPY QCKIEGCGLT 1260 FRFVSDFSRH RRKFGHHVTP AS*

Sequence ? help Back to Top

Protein Sequence Length: 1283 aa Download sequence

MGNVVLPKWL KELPLAPEFR PTDTEFADPI AYISKIEKEV GAFGICKVIP PLSKPSKRYV  60
FDKLNKTLLR TRELGLDVNL KETVDSSMRV NQDKKHEVEN RAVFTTRQQE LGKDAKRGKG  120
GVDMSQPAAQ KQVWQSGELY TLEQFESKSK AFSRSVLGSV KEVTPLTIEA LFWKAASEKP  180
IYIEYANDVP GSGFGEPEGF SGHFRACNKR KRMCGPSPGG RSYLRQQGVN KEAIPCAGVE  240
GEELVPSSSP LEELEKKLIN LEEASSPDDI PQFTKQRDLC ADAELEGTAG WKLSNCLWNL  300
QVIARSAGSL TRFMLDDIPG VTSPMVYIGM LFSWFAWHVE DHELHSLNFL HTGSPKTWYA  360
IPGEHAFAFE DVIRKQAYGG DMDHLAALKI LGEKTTLFSP EMVVASGIPC CRLVQNPGEF  420
VVTFPRAYHL GFSHGFNCGE AANFGTPQWL TIAKEAAVRR AVMDHLPMLS HQQLLYLLTM  480
SFVLRVPRTM LPGARSSRLR NRLKEERELM VKKAFIEDVL KENHLLNTLL GKESAFRAVL  540
WHPDSLPSFA RYSKVGTIVD AAPIKGVDMS VLPYKGVNED NIPLTSHRKT PNALCLDSNG  600
ILCDFQVDSG TLVCVACGIL GYPIMSVVQP SKKASMENLS AVKTNVSGVV DISRQPDSRH  660
IQCSTKIFSP ETNDDETWDT SGFMRPRIFC LEHAVKIEGL LRPKGGAKML VICHSDYQKY  720
KANAVAVAEE LRTSFNYKEV RFDSVSQEEL NLIDIAIDEK LNDFEDWTSK LGINLRFSVK  780
TRKDSLPKKM EHALNIDYLL SIMAPDSRIS YIKWGSRKSR TKQKSNCRTL ATNCNGNLSK  840
KDEIIHVTSS MESKGKILLQ YSRRKYRTTT RTFTGAKHAS ECSLACPTGV TDADRGKVND  900
HSEDIPGTSC FKSLEKRFEV CGEVEAPALN RDPVINEALA SASSVSNVLR ISGETDNINE  960
HLDAENCSSL IGSAGISSSA RKEVGGEYGF MAKASGHAML CIPEELNDDQ ITVNSFPDNS  1020
CNNLEVYATA ANNAGESEPC KHGTTTVEVD MHILPKDNLT GNSQTGGCAS SLLSLQEKQE  1080
IKLATAKMTS RDGSKRRRKV VLQTEAHKNF IKSPCEGLRP RKNRNDLVHT PDSNVAELKE  1140
EKPPTKKLKK SSGRASCNQV LDNKTSYRCS REGCQMTFRT KVDLSSHKNN KCHQRGCGKK  1200
FRSHKSVVLH QRVHDDERPL KCSWTGCTMT FKWAWARTEH MRLHTGERPY QCKIEGCGLT  1260
FRFVSDFSRH RRKFGHHVTP AS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein