PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62038988-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 372aa    MW: 40961.9 Da    PI: 9.7666
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62038988-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05828323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++Cgk F r  nL+ H r H
  AUR62038988-RA  8 CEICGKGFQRDQNLQLHRRGH 28
                    *******************88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EPRKRVYVCP EKTCVHHHPS  60
RALGDLTGIK KHFCRKHGEK KWKCEKCNKK YAVQSDCKAH SKTCGTREYK CDCGTIFSRR  120
DSFITHRAFC DALAEETARM NAASTHFNLN AAVATNNNLN YHHMMGSNIG PAVAMAQHFS  180
SIFRPLSSST KDEIALDQHQ KQRGGVFPLW LGNQLAQPGG GTHHQTSPNN SSHIMSATAL  240
LQKAAQIGST SSTNTNDAFF HGNFGLVKEN TNEIDHDNFN RRGSVFGISN STTTNAGSDV  300
EGSVDDLSTM TTIYTPNPAK RQKLINDHVD SHTQRGVGVG SGGQTRDFLG VGSQPAAVCQ  360
QPPSINGWFK A*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-98C2H2 family protein