PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039122-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 279aa MW: 31337.7 Da PI: 9.9535

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039122-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	52	74	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H AUR62039122-RA 52 FICEICNKGFQRDQNLQLHRRGH 74 89*******************88 PP
2	zf-C2H2	12.9	0.00033	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + AUR62039122-RA 129 WKCEKCSKKYAVQSDWKAHSKIC 151 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MLYTQASSSS FASPHQVQPP PPKKKRGLPG NPDPDAEVIA LSPKSLLATN RFICEICNKG 60 FQRDQNLQLH RRGHNLPWKL KQRAKDQIIR KKVYVCPEPS CVHHEPSRAL GDLTGIKKHF 120 CRKHGEKKWK CEKCSKKYAV QSDWKAHSKI CGTREYRCDC GTLFSRRDSF ITHRAFCDAL 180 AEESARAINP LSTLPSSVSH QSGGLAGITA NNSSSHFSLP PHLTSHHQLL QSLPLKREQP 240 DHHQHQFGQH SNMINVRSDI PPWLACPPPP QQQNVVDGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	92	KLKQRAKDQIIRKK
2	81	94	KLKQRAKDQIIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-97	C2H2 family protein