PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62039327-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 356aa    MW: 38123 Da    PI: 6.2304
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62039327-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00022246268123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  Fs+   L  H+r+H
  AUR62039327-RA 246 HECSICGAEFSSGQALGGHMRRH 268
                     78********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MITTTTNTSY KSDEGSDICS NNNVAEEMTT GTTTTIASDD DDIYFNGGGN GTAASTTEEE  60
EDMANCLILL AQGHSRDLTP QHPPLLSLVD DHPMYRTNNN HNIGSASGSS KFVSRKFMET  120
PSTTGKSGYY VYECKTCAKT FSSFQALGGH RASHKKPKNK DEDYSNKSRA NNIFSSVITS  180
TNNNNRNNNS NLLLSSDDEE PPFKAARHNN NNNVTSSTSL SLQLTNRALY NNGITSNHSN  240
NKGRVHECSI CGAEFSSGQA LGGHMRRHRG PMSAAVGAAA APVIRAVPLS VEQAPAAAAT  300
EMSEEMMITT AMKIPPVRNT STSLLSLDLD LNLPAPAEDN AVDKAQILTV HKLVE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-25C2H2 family protein