PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039339-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 374aa MW: 41992 Da PI: 6.8551

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039339-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.8e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl AUR62039339-RA 14 KGPWSPEEDAKLKSYIERNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38	3.8e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd +++ + G++ W+ Ia+ ++ gRt++++k++w++ AUR62039339-RA 69 GGFSEEEDRIILSLYVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE RNGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDRIIL SLYVSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKTKLLGK 120 QRRDQQQVRK ANNLIIKQED HRLVDSIPIT SSFVNHNQIP YWPPQLTTNL TSAISIPNYS 180 NSSCENYQGL NNDHTSLRKL LMKVNGGHYD SVNNNPQLIP IHNITYPNNI TQTNINLSNS 240 TLPLDTMIRT CELTNNSTNF NHQGELEGVR IGMMEGQSST FPPELEELMS SNPQRVVAED 300 GLEFLYGDYG NSFVNNDGST SDTTTCGESS GWVKMSSLVT LPNLESDCSV LVQEFGEENR 360 FEEPLRYSST NGL*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE RNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDRIIL SLYVSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKTKLLGK  120
QRRDQQQVRK ANNLIIKQED HRLVDSIPIT SSFVNHNQIP YWPPQLTTNL TSAISIPNYS  180
NSSCENYQGL NNDHTSLRKL LMKVNGGHYD SVNNNPQLIP IHNITYPNNI TQTNINLSNS  240
TLPLDTMIRT CELTNNSTNF NHQGELEGVR IGMMEGQSST FPPELEELMS SNPQRVVAED  300
GLEFLYGDYG NSFVNNDGST SDTTTCGESS GWVKMSSLVT LPNLESDCSV LVQEFGEENR  360
FEEPLRYSST NGL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	4e-84	MYB family protein