PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039343-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 458aa MW: 52097.7 Da PI: 9.0216

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039343-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.4	3.2e-15	70	157	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 Yn+YA + F +rk+k ++++++ +i +r fvCs g+++e+k +e + ++ + tgCka+++ +k g ++v + +HnH+ AUR62039343-RA 70 LYNSYAFKHSFGIRKDKLNRREDKVTIRQRFFVCSFAGFKQEKKPGEEPKVYQKRNFCTGCKAHIQFDVDKnYGLFVVVNHTMDHNHS 157 7******************99999**************99999999************99989************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MPFSDRQRST IRSWVSAIVL SFAVAESTGS RDILPPPFLA ASIPCLGFTE ASESELFDRK 60 VKSDEEAYEL YNSYAFKHSF GIRKDKLNRR EDKVTIRQRF FVCSFAGFKQ EKKPGEEPKV 120 YQKRNFCTGC KAHIQFDVDK NYGLFVVVNH TMDHNHSRVP VSKRHLIRSH RKVTEEQIAM 180 LSSLTESSIP VADAVRVLKH QACGEANLSF LCSDAYGALS AHKKMKFDGS RVIGMQPPLY 240 EYHVGHPKKD LLMHQLSRLI VCNYFGEVGL LCKHSLCVLH LNNVTYILKR YICKRWTKGA 300 MCTRVDDNVV AEKGVTPSSV WRLHFIRTFI GLVDRAQNDL AARTTIEEAI TECSNRINLL 360 QLKDKDEPCS STTNQHEVAP DNGEGNLVEP QNFEEEVLEK EDIVEEEPAF DVEVKDPIQK 420 RKKGQKNTRL KSTQEKICNK LKGQKIKSWN KKSTKGV*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MPFSDRQRST IRSWVSAIVL SFAVAESTGS RDILPPPFLA ASIPCLGFTE ASESELFDRK  60
VKSDEEAYEL YNSYAFKHSF GIRKDKLNRR EDKVTIRQRF FVCSFAGFKQ EKKPGEEPKV  120
YQKRNFCTGC KAHIQFDVDK NYGLFVVVNH TMDHNHSRVP VSKRHLIRSH RKVTEEQIAM  180
LSSLTESSIP VADAVRVLKH QACGEANLSF LCSDAYGALS AHKKMKFDGS RVIGMQPPLY  240
EYHVGHPKKD LLMHQLSRLI VCNYFGEVGL LCKHSLCVLH LNNVTYILKR YICKRWTKGA  300
MCTRVDDNVV AEKGVTPSSV WRLHFIRTFI GLVDRAQNDL AARTTIEEAI TECSNRINLL  360
QLKDKDEPCS STTNQHEVAP DNGEGNLVEP QNFEEEVLEK EDIVEEEPAF DVEVKDPIQK  420
RKKGQKNTRL KSTQEKICNK LKGQKIKSWN KKSTKGV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	420	447	KRKKGQKNTRLKSTQEKICNKLKGQKIK
2	420	455	KRKKGQKNTRLKSTQEKICNKLKGQKIKSWNKKSTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-10	FAR1 family protein