PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62039546-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family ARF
Protein Properties Length: 497aa    MW: 55045.3 Da    PI: 6.648
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62039546-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19e-2072170599
                     -..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   5 ltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      t+sd+++ g +++pk++a ++       + ++ +  tl + d +g +We+++iyr++++r+++t+GW  Fv+++ L  +D+v+F +++  ++ l
  AUR62039546-RA  72 ITTSDANNGGGFSVPKNCAVSIfptlnfeDDPPVQ--TLEISDVHGVKWEFRHIYRGTPRRHLFTSGWTTFVNSKYLTRNDSVIFARNK-VTGDL 163
                     689************************95555545..89999********************************************655.78889 PP

                     EEEEE-S CS
              B3  93 vvkvfrk 99 
                      v+++r+
  AUR62039546-RA 164 SVGIRRH 170
                     9999985 PP
2Auxin_resp56.41.3e-19211292583
      Auxin_resp   5 astksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafeteds.serrl.sGtvvgvsdl.dpvrWpnSkWrsLk 83 
                     a ++ + evvY+Pra+ +eFvv+++kve+a++v+++ G+R+++  +  d  +  ++  Gtv++v  + +   Wp+S Wr+L+
  AUR62039546-RA 211 AIKGLPLEVVYYPRAGLPEFVVEAHKVEQACRVNWTSGTRVRFPQNAGDGgPSVTWfIGTVTSVVPSpNDGPWPGSVWRMLQ 292
                     5567889************************************99987752666778******986424579********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    
MVVDVAQKHS DVYFFPQGFL EQASTPASFS SMVTSRPYVA CRVVDVTYWG DPVTDEVFVK  60
YRLMPLTDIH CITTSDANNG GGFSVPKNCA VSIFPTLNFE DDPPVQTLEI SDVHGVKWEF  120
RHIYRGTPRR HLFTSGWTTF VNSKYLTRND SVIFARNKVT GDLSVGIRRH FTPLSRLPKG  180
YVPKPPRPGV FSRSQRGRVA AEVVVEETEK AIKGLPLEVV YYPRAGLPEF VVEAHKVEQA  240
CRVNWTSGTR VRFPQNAGDG GPSVTWFIGT VTSVVPSPND GPWPGSVWRM LQVTWDEPEK  300
LEEVRMLSPW QVECIAXXXX XXXXTIRAAF DTPAKRLKGV QNSALLADGK GDIYFTPQLG  360
FGSLVMDQLI PSHMNYNIFP AGMQGARQFP SIYPSNSPMI MNDDSHQGHT DDNLDSNMSP  420
TQKVEGVSTD LNIASSSSET RSLDSLNSVQ FFGAMSTGKG VTSFQLFGKI IHIEQPPANT  480
DDISCTHAEF RGTFPL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-95ARF family protein