PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039579-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

DBB

Protein Properties

Length: 311aa MW: 33522.5 Da PI: 4.9139

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039579-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.3	2.4e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC+dC ++ H H++v+l AUR62039579-RA 4 QCNVCETAEATVLCCADEAALCHDCDEKVHAAnklaskHQRVSL 47 7****99*******************66889999998875 PP
2	zf-B_box	26.8	1.1e-08	54	94	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++C+ ++e +fC +++ llC++C ++H H AUR62039579-RA 54 MPNCDICQETVGYFFCLEDRALLCRKCDISIHTAnafvstH 94 789****99*******************545566666 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MKIQCNVCET AEATVLCCAD EAALCHDCDE KVHAANKLAS KHQRVSLSNS SSHMPNCDIC 60 QETVGYFFCL EDRALLCRKC DISIHTANAF VSTHQRFLLT GVKVGLEPTE PGSSSSVGKS 120 HSGEKVSDGE NRATLKRSAP ASTTTEYAKA DPVQRGIEAL MPSKRSMTKL VASEFPKIQP 180 VQSSALEDIT QSRMTVAGGS AAGTLPQWPM DEFLGLNDFQ LNYGFPDNGS SKADSGKLGD 240 SDSSILRSIE DDLDSDDRLG QVPDVSWTVP QVPSPPTASG LYWPKSSQHM VDNAVFVPDI 300 CWPQGPNYFQ *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	2e-81	DBB family protein