PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62039601-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MYB
Protein Properties Length: 289aa    MW: 32522.8 Da    PI: 9.8111
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62039601-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.2e-171762147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G+ +W++ a++++ gR++k+c++rw++ 
   AUR62039601-RA 17 RGHWRPAEDEKLRKLVEQYGPQNWNSLAEKLQ-GRSGKSCRLRWFNQ 62
                     899*****************************.***********996 PP
2Myb_DNA-binding582.1e-1869112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++T+eE+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ 
   AUR62039601-RA  69 RKAFTEEEEERLLTAHRIHGNK-WALISRLFP-GRTDNAVKNHWHV 112
                      789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MEDDNDNEMK SSSSCPRGHW RPAEDEKLRK LVEQYGPQNW NSLAEKLQGR SGKSCRLRWF  60
NQLDPRINRK AFTEEEEERL LTAHRIHGNK WALISRLFPG RTDNAVKNHW HVIMARMQRE  120
RSKQQSNKRS SLISSSSVLS TTSSTHDFLS KTWKSQNNYG TLKNNDHGHG LYKFEQYSND  180
ERKLRNYRAS SSSASLTQPQ CLLGNWRGIN NNSTSSSIFE HSNGFNTRFS SCGPSSILLD  240
GSQCGIGFGS SSYGVNYCTD HKGIIPSGYS PFSSQSKIQV AQSGADPS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-66MYB family protein