PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039812-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 356aa MW: 40159.5 Da PI: 7.2152

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039812-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd llv +++++G+g+W++++ g+ R+ k+c++rw +yl AUR62039812-RA 14 KGPWTPEEDILLVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	49	1.4e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l AUR62039812-RA 67 RGNFTDQEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MGRPPCCDKE GVKKGPWTPE EDILLVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLRKKQ 120 SDNNHHQSSR SDGFVSSPSS PENQSTNSRG QWERRLQTDI HMAKQALCDA LSTMDQKPSS 180 NMPDSMNSSQ KISLNSSHNN NNKQGQTASS IYASSTENIA RLLQGWNMKS PKKEQSSSVS 240 TDHHSLCSTM EVEYGHEQKP KVASDNHHFS KNEAFQSLFG TIESSESPYS DFSQTVSPEA 300 SFFEHESKPL SDDGRGTLSV LEKWLFDDCS IQHCGPQSQV HDLIDMPLRE TADFE*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MGRPPCCDKE GVKKGPWTPE EDILLVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLRKKQ  120
SDNNHHQSSR SDGFVSSPSS PENQSTNSRG QWERRLQTDI HMAKQALCDA LSTMDQKPSS  180
NMPDSMNSSQ KISLNSSHNN NNKQGQTASS IYASSTENIA RLLQGWNMKS PKKEQSSSVS  240
TDHHSLCSTM EVEYGHEQKP KVASDNHHFS KNEAFQSLFG TIESSESPYS DFSQTVSPEA  300
SFFEHESKPL SDDGRGTLSV LEKWLFDDCS IQHCGPQSQV HDLIDMPLRE TADFE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28910.1	1e-108	MYB family protein