PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039930-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

YABBY

Protein Properties

Length: 187aa MW: 20838.8 Da PI: 10.2923

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039930-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	165.2	5e-51	3	150	21	163
YABBY 21 ilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes..hldeslkee.....lleelkveeenlksnvekeesastsvsseklsenedee 108 +++vsvPs+sl+k+vtvrCGhCt+ll vn + + + s hl ++ + + l+ ++ ++++ +s + + s+ ++e AUR62039930-RA 3 VIVVSVPSSSLYKTVTVRCGHCTHLLPVNTRSLLLQPPPASqyHLPHHH--NyyspnSHYRLGEMPNQAPNFSLTQSNGASSYMNPSSSRGGSNE 95 799************************99998776554401443332..222333444444444444333333333334444445589999 PP YABBY 109 vprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 +pr+p ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaakn a + AUR62039930-RA 96 LPRAPTTNRPPEKRQRVPSAYNRFIKEEIQRIKAENPDISHREAFSAAAKNLARL 150 ***************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MFVIVVSVPS SSLYKTVTVR CGHCTHLLPV NTRSLLLQPP PASQYHLPHH HNYYSPNSHY 60 RLGEMPNQAP NFSLTQSNGA SSYMNPSSSR GGSNELPRAP TTNRPPEKRQ RVPSAYNRFI 120 KEEIQRIKAE NPDISHREAF SAAAKNLARL LLLYVLHKIE SPSLSLMNVI RCSGSKDKCT 180 IPTIHK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-36	YABBY family protein