PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62040002-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 161aa MW: 18225.3 Da PI: 8.8011

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62040002-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H AUR62040002-RA 54 FSCTYCKRKFYSSQALGGHQNAH 76 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence
MDFELKTSLH QNTCTSSSND LPHLINLNLV LDQSISSSMS SSLPTSPASE ARVFSCTYCK 60 RKFYSSQALG GHQNAHKLER TLAKKSKLLN SQLVNDHKAN NFDSSRMAAM DTHQLHAYAH 120 RQYREQRFEY NFGSAQMVEY GRRDINYGST KEDIDLSLRL *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	2e-22	C2H2 family protein