PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62040076-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 588aa MW: 67480.2 Da PI: 7.3727

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62040076-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.7	1.2e-20	28	116	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y++ +GF +r sk ++ +++g+i +r +Cs +g+r ++k++ +++ra tr+gC a++kv+ + +g ++++k+e +HnH l+ AUR62040076-RA 28 DFYNIYSRAIGFGIRLSKFHRDDNTGTILDRIICCSFKGSRGKDKRA-PYVKKNRALTRVGCSAMIKVSSRINGLFRIIKFEPQHNHVLS 116 6****************************************9999.9999*********************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MNEIHSKLPN EAIPMIEMEF ASENIAYDFY NIYSRAIGFG IRLSKFHRDD NTGTILDRII 60 CCSFKGSRGK DKRAPYVKKN RALTRVGCSA MIKVSSRING LFRIIKFEPQ HNHVLSTPSK 120 THLFRSHKSI NSSQASELDT SCSYGIAPKA SMELMSRRAG GRDNLGFLRV DCNNYLRKKR 180 EKEMKVGDTG GVLEYLQRKQ TDDPKFFYAI QVDVDDLITN IFWADARMMS DYDYFGDVVC 240 FDITCKKQKD GRPFAMFVGV NHHKQTIIFG VALLYDETTK TFNWIFDTFV KAMHGKKPKT 300 ILTDQDQAMA NALSTKWPET YHRLCVWHMY QNAAKHLHHV FEKFKDFAKY FSSCVYDYDD 360 EADFIDAWDN MLVKYDLVGN SWLEWVYNLR EKWALVYGRQ TFCADMSTTQ RSERVAAQSE 420 DTYKWALDVH QKSLAEVEAR LKKLICGEED DNEEESLDCE ENVNVELQCD TLTVKGIKMR 480 GSSPGSRGRG RGNGSNNGST RCKSSLEKGR TRKKHCTNDQ VSKTTFSEMN YTPTSERQMD 540 YTIPLSNNYP IAHFSYTTPF FYEDVDTVDL GSGSLTQLLN DDESHVP*

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MNEIHSKLPN EAIPMIEMEF ASENIAYDFY NIYSRAIGFG IRLSKFHRDD NTGTILDRII  60
CCSFKGSRGK DKRAPYVKKN RALTRVGCSA MIKVSSRING LFRIIKFEPQ HNHVLSTPSK  120
THLFRSHKSI NSSQASELDT SCSYGIAPKA SMELMSRRAG GRDNLGFLRV DCNNYLRKKR  180
EKEMKVGDTG GVLEYLQRKQ TDDPKFFYAI QVDVDDLITN IFWADARMMS DYDYFGDVVC  240
FDITCKKQKD GRPFAMFVGV NHHKQTIIFG VALLYDETTK TFNWIFDTFV KAMHGKKPKT  300
ILTDQDQAMA NALSTKWPET YHRLCVWHMY QNAAKHLHHV FEKFKDFAKY FSSCVYDYDD  360
EADFIDAWDN MLVKYDLVGN SWLEWVYNLR EKWALVYGRQ TFCADMSTTQ RSERVAAQSE  420
DTYKWALDVH QKSLAEVEAR LKKLICGEED DNEEESLDCE ENVNVELQCD TLTVKGIKMR  480
GSSPGSRGRG RGNGSNNGST RCKSSLEKGR TRKKHCTNDQ VSKTTFSEMN YTPTSERQMD  540
YTIPLSNNYP IAHFSYTTPF FYEDVDTVDL GSGSLTQLLN DDESHVP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	182	RKKREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-92	FAR1 family protein