PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62040260-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 245aa MW: 26927.5 Da PI: 7.9967

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62040260-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	102.7	3.2e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++p+++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++q+ AUR62040260-RA 2 SCNGCRVLRKGCSESCILRPCLqwidtPESQGHATVFVAKFFGRAGLMSFISNVPDSQRPALFQSLLYEACGRTVNPVSGAVGLLWTGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ AUR62040260-RA 97 AVETVLR 103 *998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MSCNGCRVLR KGCSESCILR PCLQWIDTPE SQGHATVFVA KFFGRAGLMS FISNVPDSQR 60 PALFQSLLYE ACGRTVNPVS GAVGLLWTGN WHVCQAAVET VLRGGTLRPI SEFLVGAPPS 120 PVPTIVDADD NSEVVCPSKS NNNNNTWRKQ IGGLNMMQQD VNNNIQKSRS SPPPPRFTNI 180 KRRKEEDDYH VKHLDLSLTP PSFLHAPPQQ RPGTPSLNSE ESATTVSFES DNYYQPKLLN 240 LFVS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	5e-81	LBD family protein