PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62040293-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family CO-like
Protein Properties Length: 325aa    MW: 35477.4 Da    PI: 5.2216
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62040293-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.8e-072766438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Ht 38
                    + C++++  +  l+C++++ +lC  C  ++H       H+
  AUR62040293-RA 27 KPCDNCNIANSLLYCNTDSAFLCGPCDAKIHPTtryprHE 66
                    57******99*********************444556666 PP
2zf-B_box29.51.5e-0968112341
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                      ++C+ +e++++  fC+ ++  lC +C   +H+       H++v 
  AUR62040293-RA  68 VWVCEVCESQPALVFCKADGANLCSSCDHDIHSAnplarrHERVA 112
                     689*****************************6688888898875 PP
3CCT713e-24258301144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpRvKGrF+k++
  AUR62040293-RA 258 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRVKGRFAKRN 301
                     9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MAATPTTDDN NSIKGLLTGW GLTLTGKPCD NCNIANSLLY CNTDSAFLCG PCDAKIHPTT  60
RYPRHERVWV CEVCESQPAL VFCKADGANL CSSCDHDIHS ANPLARRHER VAVIPFLESP  120
IDAVAGRSSA FLVPDNLDAS RDIVVGNNNS NTAVTNDSSS DDADAWLIPN PNNSFLYNES  180
DILNYDFGCS KFQFQPQIDT KPQIIVDDDA RNYAFADSVV SSSDIGVVPD GSATSMTSEV  240
SYGFAKSTAP DGGPTMNREA RVLRYREKRK NRKFEKTIRY ASRKAYAETR PRVKGRFAKR  300
NDSNETSEID FAVDNGGYGV VPAF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.14e-66CO-like family protein