PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62040500-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

ARF

Protein Properties

Length: 696aa MW: 76510.3 Da PI: 6.6015

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62040500-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.1	3.5e-23	120	221	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + + +d +g+ W++++iyr++++r++lt+GW+ Fv+a++L +gD++vF + + AUR62040500-RA 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGEPWKFRHIYRGTPRRHLLTTGWSTFVNAKKLIAGDSIVFL--RAE 210 89**************************997656666..69999****************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ AUR62040500-RA 211 NGDLCVGIRRA 221 8999**997 PP
2	Auxin_resp	111.5	8.1e-37	287	370	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Pra+t+eFvvk+ +v++al+v+++ GmRfkm fetedss++++ +Gt+++v+ +dp++W++S+Wr+L+ AUR62040500-RA 287 AATYAAKGQPFEVVYYPRAGTPEFVVKAGHVKAALQVRWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPMHWSDSPWRLLQ 370 678899****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MITFMDPKEK IKEADNCLDS QLWHACAGGM VQMPPVNAKI YYFVQGHIEH ANGNVDFRSF 60 PRIPSYVLCR VEDIRYLADQ ETDEVYAKIR LNPVTNEVDY SDEDVGVHGA EVQENKPASF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQNI LAKDVHGEPW KFRHIYRGTP 180 RRHLLTTGWS TFVNAKKLIA GDSIVFLRAE NGDLCVGIRR AKRGLGGGLD STSGWNPGST 240 VLNYGAFSAF LREDENRISR NGNGVGLNSG GNASGKGKVM MESVIEAATY AAKGQPFEVV 300 YYPRAGTPEF VVKAGHVKAA LQVRWCSGMR FKMPFETEDS SRISWFMGTI SSVQVADPMH 360 WSDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPPRKK FRLPHHPDFP 420 MDGQLPVPSF PGNFLGPNNP FGCLPDNSPA GMQGARHAQF GLSLSDLHMS KLQSGLFPGG 480 FPALDPTTTL PNRPSSSLTY QKPGSNENIS CLLTMGNSNQ SIKKSDVTKP HHFVLFGKPI 540 LTEQQMSLSR SGDTVSPVPT GNGSSEGNVD KAGNVSDGSG SGHNQDRSSM EQLPWIKDNR 600 PEMDSELETG HCKVFMESED VGRTLELTLL KSFEELCSRL ANMFCIESSD MLNRVVYRDG 660 AGSSKQVGDE PFSEFAKRAK RLTILMDSSS DNVGA*

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MITFMDPKEK IKEADNCLDS QLWHACAGGM VQMPPVNAKI YYFVQGHIEH ANGNVDFRSF  60
PRIPSYVLCR VEDIRYLADQ ETDEVYAKIR LNPVTNEVDY SDEDVGVHGA EVQENKPASF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQNI LAKDVHGEPW KFRHIYRGTP  180
RRHLLTTGWS TFVNAKKLIA GDSIVFLRAE NGDLCVGIRR AKRGLGGGLD STSGWNPGST  240
VLNYGAFSAF LREDENRISR NGNGVGLNSG GNASGKGKVM MESVIEAATY AAKGQPFEVV  300
YYPRAGTPEF VVKAGHVKAA LQVRWCSGMR FKMPFETEDS SRISWFMGTI SSVQVADPMH  360
WSDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPPRKK FRLPHHPDFP  420
MDGQLPVPSF PGNFLGPNNP FGCLPDNSPA GMQGARHAQF GLSLSDLHMS KLQSGLFPGG  480
FPALDPTTTL PNRPSSSLTY QKPGSNENIS CLLTMGNSNQ SIKKSDVTKP HHFVLFGKPI  540
LTEQQMSLSR SGDTVSPVPT GNGSSEGNVD KAGNVSDGSG SGHNQDRSSM EQLPWIKDNR  600
PEMDSELETG HCKVFMESED VGRTLELTLL KSFEELCSRL ANMFCIESSD MLNRVVYRDG  660
AGSSKQVGDE PFSEFAKRAK RLTILMDSSS DNVGA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein