PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62040706-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 149aa    MW: 16478 Da    PI: 8.3867
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62040706-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.86.7e-3771071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+ +Cv+apyf  ++  ++fa+vhk+FGasnv++ll +lpe+ r++a+ ++ +eA ar+rdPvyG+v+ i++lqq++++l++e+
  AUR62040706-RA   7 SCGACKFLRRKCTIECVFAPYFSYDEaVAHFAAVHKVFGASNVSRLLLHLPEHFRSEAALTISFEAIARMRDPVYGCVAYIHALQQEVATLQEEI 101
                     6***********************9956******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+++
  AUR62040706-RA 102 EVLGNQ 107
                     *99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    
MTGVSTSCGA CKFLRRKCTI ECVFAPYFSY DEAVAHFAAV HKVFGASNVS RLLLHLPEHF  60
RSEAALTISF EAIARMRDPV YGCVAYIHAL QQEVATLQEE IEVLGNQMVN TMSIGITSDC  120
EGLKPPNHTS SSGRRKVVHR PPQQPWRK*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-45LBD family protein