PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62040881-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 135aa MW: 14762.7 Da PI: 7.0157

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62040881-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.6	1.6e-11	31	50	7	26
SGGGGTS--TTTTT-SS-SS CS zf-CCCH 7 rffartGtCkyGdrCkFaHg 26 +f+++tG+Ck+G++C+F+H+ AUR62040881-RA 31 KFYMKTGECKFGEKCRFHHP 50 79*****************8 PP
2	zf-CCCH	42.5	1e-13	79	103	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 e C+f+++tGtC+yG++CkF H+p AUR62040881-RA 79 VEHCPFYMKTGTCSYGANCKFDHPP 103 567********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence
MWVVRVFKGI ISGGVVAVQV QGVLGLHRGS KFYMKTGECK FGEKCRFHHP IDRSAPTRNQ 60 TLEQNVKFTL AGLPRREGVE HCPFYMKTGT CSYGANCKFD HPPPGEVMAV AGQETSTKAE 120 EEETEDGENV ATAE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-36	C3H family protein