PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62040882-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 146aa    MW: 15778.8 Da    PI: 8.283
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62040882-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.6e-091642127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C++f++t  Ck+G  CkF+H++
  AUR62040882-RA 16 PGEPDCPYFLKTQKCKFGQMCKFNHPK 42
                    5789*********************96 PP
2zf-CCCH39.87.3e-136387327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C+f++++G Ck+G +CkF+H++
  AUR62040882-RA 63 EPVCSFYMKMGKCKFGTSCKFHHPK 87
                    789********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    
MQPASVPSSD SLPERPGEPD CPYFLKTQKC KFGQMCKFNH PKDKLDSSSC KTDDPDLPDR  60
PSEPVCSFYM KMGKCKFGTS CKFHHPKDIK VPSNKQEAGD GVQTHSIDQN GSDGTAGDGN  120
IIKPTSNAAL SYNSKGLPMR PVSPK*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-42C3H family protein