PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62041016-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 469aa MW: 52184.9 Da PI: 8.1179

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62041016-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.3	9.9e-20	31	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+++++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l AUR62041016-RA 31 KGPWTQEEDEIIIKLVARYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 77 79****************************.***********97 PP
2	Myb_DNA-binding	54.3	3.1e-17	83	126	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT +E++ l +a++ +G++ W+ Ia++++ gRt++ +k++w++ AUR62041016-RA 83 KDAWTLDEELALMNAHRIYGNK-WAEIAKYLP-GRTDNAIKNHWNS 126 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MFKYAAEFFP DRSEVQCLHR WQKVLNPELV KGPWTQEEDE IIIKLVARYG PTKWSVIAKS 60 LPGRIGKQCR ERWHNHLNPD IKKDAWTLDE ELALMNAHRI YGNKWAEIAK YLPGRTDNAI 120 KNHWNSSLKK KLDFYLATGK LPPVAKNNLQ NNARDVEIPT SNEKLMVGSN KESDSSAQTS 180 SGATDHVPED TNIKLNMASN LQEMGPSSCP ADETADSDVV ERSSYIDFSC KNIHSLPLPS 240 LDKCRSVDVL GQNEDAATPL HPVNPTYGSL YYKPPQCETC SPSESNLTNS CTQSDCSPAP 300 LTSRTGFFTP PSVKSNGVSA HSPESILKIA AMTFPNTPSI MRKRKVQYQT PQTLKNGKCE 360 EASCKDRCSS SIEQQSAIHQ SMNQDGSLVP TPPSHSSVVN EFCNGKPFNA SPPYRLRTKR 420 TAIIKSVEKQ LEFTLDKEKE GDTKSLELQF RGNSPLREGM SYTKMGIT*

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MFKYAAEFFP DRSEVQCLHR WQKVLNPELV KGPWTQEEDE IIIKLVARYG PTKWSVIAKS  60
LPGRIGKQCR ERWHNHLNPD IKKDAWTLDE ELALMNAHRI YGNKWAEIAK YLPGRTDNAI  120
KNHWNSSLKK KLDFYLATGK LPPVAKNNLQ NNARDVEIPT SNEKLMVGSN KESDSSAQTS  180
SGATDHVPED TNIKLNMASN LQEMGPSSCP ADETADSDVV ERSSYIDFSC KNIHSLPLPS  240
LDKCRSVDVL GQNEDAATPL HPVNPTYGSL YYKPPQCETC SPSESNLTNS CTQSDCSPAP  300
LTSRTGFFTP PSVKSNGVSA HSPESILKIA AMTFPNTPSI MRKRKVQYQT PQTLKNGKCE  360
EASCKDRCSS SIEQQSAIHQ SMNQDGSLVP TPPSHSSVVN EFCNGKPFNA SPPYRLRTKR  420
TAIIKSVEKQ LEFTLDKEKE GDTKSLELQF RGNSPLREGM SYTKMGIT*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-119	MYB family protein