PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62041175-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 248aa    MW: 26836 Da    PI: 7.432
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62041175-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.43.1e-40291291100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lqqq+++l+ael
  AUR62041175-RA  29 PCGACKFLRRKCTNGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPMNRRQDAVVTILYEAQARLSDPVYGCVSTILALQQQVATLQAEL 123
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  AUR62041175-RA 124 AMVQSQ 129
                     **9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MPDHHDGRRK LGKRASAAVS SDQEGPLAPC GACKFLRRKC TNGCIFAPHF GSDQGAARFA  60
AVHKVFGASN VSKLLLHIPM NRRQDAVVTI LYEAQARLSD PVYGCVSTIL ALQQQVATLQ  120
AELAMVQSQV INSRLAMANA LQTSQQQLGN GYEVMHLPLN HHVHHQPAYS NNSSASNNLL  180
NMNTSATTTG YVSSTYNNDF SAVADASTAP SPHSLDLLRL SRPSQDDDED DEQISRNHIA  240
FANHLIH*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-58LBD family protein