PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62041339-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 370aa MW: 42088.3 Da PI: 9.1812

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62041339-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.7e-16	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rWTteEd ll +vkq+G++ W +++++m+ + R +k+c +rw +yl AUR62041339-RA 4 RQRWTTEEDALLSAYVKQYGPREWQLVSQRMNtpLDRDAKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	37.1	7.5e-12	59	104	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w y+ AUR62041339-RA 59 KGSLTEEEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVYK 104 6788****************.*****.*****99998886 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MKERQRWTTE EDALLSAYVK QYGPREWQLV SQRMNTPLDR DAKSCLERWK NYLKPGIKKG 60 SLTEEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVYKEKQERT KKETSKCFEP 120 IEEGKYDHIL ETFAEKLVKE RTPPGPTFLM ATSNGGFLHS SDHPPPPVPP PPPVTSTTTM 180 LPPWLSPSNG VRPPSSPSVT LSLSSSIVPT PAPTAVAWLP QERVLHNIDN SPLTLGCLPS 240 CPGALPEQMI MSELMDCCRE LDEGHRALAA HKKEAAWRLN RVELQLESEK ASRKREKMEE 300 IEAKINALKD EQKASIERIE AEYREQLAGL RRDAEAKEQK LAEHWATKHM RITKLLEQMG 360 CRTRVSEPS*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MKERQRWTTE EDALLSAYVK QYGPREWQLV SQRMNTPLDR DAKSCLERWK NYLKPGIKKG  60
SLTEEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVYKEKQERT KKETSKCFEP  120
IEEGKYDHIL ETFAEKLVKE RTPPGPTFLM ATSNGGFLHS SDHPPPPVPP PPPVTSTTTM  180
LPPWLSPSNG VRPPSSPSVT LSLSSSIVPT PAPTAVAWLP QERVLHNIDN SPLTLGCLPS  240
CPGALPEQMI MSELMDCCRE LDEGHRALAA HKKEAAWRLN RVELQLESEK ASRKREKMEE  300
IEAKINALKD EQKASIERIE AEYREQLAGL RRDAEAKEQK LAEHWATKHM RITKLLEQMG  360
CRTRVSEPS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-145	MYB family protein