PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62041894-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Nin-like

Protein Properties

Length: 774aa MW: 87278.6 Da PI: 7.6591

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62041894-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	35.2	2.4e-11	551	592	3	44
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 +++s edl+ y +++++dAA++Lg++ ++LKr+C ++ I+ W AUR62041894-RA 551 NNLSKEDLEPYLKGTLNDAANDLGISKSTLKRKCKELKIENW 592 689*************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence
MLLTQELMLE PVPDGIFTSY PSSDPQFPSW MMVDSFSNND SSVENDEALG TFGRVDEPTP 60 TVSLPEELVL PFSPVSNFID QVNDDGSGNV KLLAEQNLEK TLLDFKPKLK TNQIVAAQLW 120 FPTKIVKTNV LRSSQHNIPG SWTEDKRFMR DVTEGYLCES LTRVYSSDKN SKTGRSFNII 180 DTLIPYLSTM EDVTCLLNRQ VSVTAYQLRC PQWAPNLHIY KSHHQNSPKP SITKENYIIC 240 GTLAIPVFDP YTNQCVGVYE VVVASTEVDL VIIDIICNLL KAVNLRADTQ FHYQPRQRLL 300 AEISKVMIKV CKDHDLPLAQ TWMPCTCPDQ NCNSQKLCMS NAELPFYMRD SSYFPFWRAG 360 AMYHMAEGQA VAGTTFSSKG LCFCRDITRF PDNFALVPLS RQFKINCSLA ICLGSAYANN 420 DFYIVQFFWQ RTLKNTIEND DLKVLSVTSS MKQQFDKLNM VSPTYEELEA ETEQVRYRTK 480 LIGGEGIRDD FTFLSNTVMT GEEQTEVSLV LPEEISSNMF IDHQDHKSIN NPGIEVVQCK 540 VIKKSRKKRC NNLSKEDLEP YLKGTLNDAA NDLGISKSTL KRKCKELKIE NWQDERKKKG 600 IGVPARRKRA AKRNLLQGNN LNLNGKVFRA DDGDRANLQR HFDKAREDLK IFRSKAINHQ 660 NDACGPKPPG FHYASLGREV FKLQAHGVCS QGMTILLDGS WQKATGTAGM GWGFINTYGQ 720 FQEGGGHYCK ANSALHAEAL ACLMTIRWAK TKTWGKIVLF SDSAILVSIL DNQ*

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence

MLLTQELMLE PVPDGIFTSY PSSDPQFPSW MMVDSFSNND SSVENDEALG TFGRVDEPTP  60
TVSLPEELVL PFSPVSNFID QVNDDGSGNV KLLAEQNLEK TLLDFKPKLK TNQIVAAQLW  120
FPTKIVKTNV LRSSQHNIPG SWTEDKRFMR DVTEGYLCES LTRVYSSDKN SKTGRSFNII  180
DTLIPYLSTM EDVTCLLNRQ VSVTAYQLRC PQWAPNLHIY KSHHQNSPKP SITKENYIIC  240
GTLAIPVFDP YTNQCVGVYE VVVASTEVDL VIIDIICNLL KAVNLRADTQ FHYQPRQRLL  300
AEISKVMIKV CKDHDLPLAQ TWMPCTCPDQ NCNSQKLCMS NAELPFYMRD SSYFPFWRAG  360
AMYHMAEGQA VAGTTFSSKG LCFCRDITRF PDNFALVPLS RQFKINCSLA ICLGSAYANN  420
DFYIVQFFWQ RTLKNTIEND DLKVLSVTSS MKQQFDKLNM VSPTYEELEA ETEQVRYRTK  480
LIGGEGIRDD FTFLSNTVMT GEEQTEVSLV LPEEISSNMF IDHQDHKSIN NPGIEVVQCK  540
VIKKSRKKRC NNLSKEDLEP YLKGTLNDAA NDLGISKSTL KRKCKELKIE NWQDERKKKG  600
IGVPARRKRA AKRNLLQGNN LNLNGKVFRA DDGDRANLQR HFDKAREDLK IFRSKAINHQ  660
NDACGPKPPG FHYASLGREV FKLQAHGVCS QGMTILLDGS WQKATGTAGM GWGFINTYGQ  720
FQEGGGHYCK ANSALHAEAL ACLMTIRWAK TKTWGKIVLF SDSAILVSIL DNQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	581	599	KRKCKELKIENWQDERKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	7e-57	Nin-like family protein