PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62042021-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 295aa MW: 33410.2 Da PI: 9.4379

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62042021-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32	4e-10	7	79	13	88
FAR1 13 svrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 sv ++++kk+++++++ r ++Cs g+++ +++ ++ rtgCka ++ +k +g ++v k e eHnH+ AUR62042021-RA 7 SVHVKETKKTRNDKTVRLRFLTCSYAGFKKIKSDV----LYQKRDFRTGCKAYIQFDVDKeSGLYCVVKHEMEHNHS 79 577888999999999999**********98877....7778889*******9999*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MLLSMDSVHV KETKKTRNDK TVRLRFLTCS YAGFKKIKSD VLYQKRDFRT GCKAYIQFDV 60 DKESGLYCVV KHEMEHNHSR VPVSKRHLIR SHRKVSGDQL AMVTSLSENG IPIADAYRVI 120 RDQAGEAINE CASRIEILLR KYGNEEGHGK ENDDNTDAQA AAQCLESGNL LEPQDVIQAN 180 VVQDSPTSAE KPIENEKECM VKDPIRRRKK GQKNIRLKST QEKICNMLKG QKIKSWKKKS 240 AKGMSIMKKK TQDTIKDSLT VPEGNTLAHS SLFGGSIEYF EPDEYFEVHV TPFT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	234	RRRKKGQKNIRLKSTQEKICNMLKGQKIK
2	206	242	RRRKKGQKNIRLKSTQEKICNMLKGQKIKSWKKKSAK
3	207	235	RRRKKGQKNIRLKSTQEKICNMLKGQKIK
4	207	243	RRRKKGQKNIRLKSTQEKICNMLKGQKIKSWKKKSAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-07	FAR1 family protein