PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62042889-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 424aa MW: 48071.7 Da PI: 9.8057

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62042889-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.7	5.5e-17	36	123	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergfer..spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ ++aLiea + + +l+rg+l++++W ev++++ + g++r + +qCk++++ l+k+yk +k + + + +s +p+f++l+ AUR62042889-RA 36 CWSEDATHALIEAWGSHHLALNRGNLRQHQWLEVAAAVNSAGYRRrrTDIQCKNRIDTLKKKYKIEKSKTVDSSGGYVSPWPFFSRLD 123 7****************************************654599******************99999*******997 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MATNADGISP SPALRPRPQP LPGTLTRASP VLREDCWSED ATHALIEAWG SHHLALNRGN 60 LRQHQWLEVA AAVNSAGYRR RRTDIQCKNR IDTLKKKYKI EKSKTVDSSG GYVSPWPFFS 120 RLDFLISGDG EKPLSSGRKI SPDTPSTTTA LTKFPVAPRS ALKRKRPVPV DDSFFRQQFA 180 AVIAAAAEVE AHESSEERER ESSERTGTSS DSGGRERRDS RVEDEGFNNG CRQLAEAIMR 240 FGEVYERVET VKQEQLIDLE KHRMQFTKDL EYQRMKLLMD TQLQLARIKR SKHSDDAAEC 300 IILLRELWNN DIDASEVHRV HLEINSILQL RTASSAVLTA KETWRYYCWF NMKLVLLTVT 360 CSLCTKKKEK RCKSVLILHV LGYNANLLKT GKSVFLVHTA GDLQQNSDKF KDTNLVFRRR 420 IAA*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MATNADGISP SPALRPRPQP LPGTLTRASP VLREDCWSED ATHALIEAWG SHHLALNRGN  60
LRQHQWLEVA AAVNSAGYRR RRTDIQCKNR IDTLKKKYKI EKSKTVDSSG GYVSPWPFFS  120
RLDFLISGDG EKPLSSGRKI SPDTPSTTTA LTKFPVAPRS ALKRKRPVPV DDSFFRQQFA  180
AVIAAAAEVE AHESSEERER ESSERTGTSS DSGGRERRDS RVEDEGFNNG CRQLAEAIMR  240
FGEVYERVET VKQEQLIDLE KHRMQFTKDL EYQRMKLLMD TQLQLARIKR SKHSDDAAEC  300
IILLRELWNN DIDASEVHRV HLEINSILQL RTASSAVLTA KETWRYYCWF NMKLVLLTVT  360
CSLCTKKKEK RCKSVLILHV LGYNANLLKT GKSVFLVHTA GDLQQNSDKF KDTNLVFRRR  420
IAA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	2e-39	Trihelix family protein