PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62042929-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 200aa    MW: 23182.3 Da    PI: 7.7142
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62042929-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.2e-27251150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien +nrqvt+skRr+g++KK +EL +LCda++ +iifs tgkl++y+
  AUR62042929-RA  2 KRIENRTNRQVTYSKRRQGLMKKTKELAILCDAQIGLIIFSGTGKLHTYP 51
                    79***********************************************8 PP
2K-box62.91.3e-21761591194
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                     + + e+l  el+ L++ i+n ++++R++lGedL++L l+ L++ eq+Le+sl+ iR +Kn+l+ +q+e+l++ke+ lq +n ++
  AUR62042929-RA  76 QDNREELFSELQALREAIHNAEQSIRNYLGEDLGPLPLEYLHKHEQKLESSLNVIRVRKNQLMQQQMENLRRKEQLLQTDNGNM 159
                     456788999**********************************************************************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MKRIENRTNR QVTYSKRRQG LMKKTKELAI LCDAQIGLII FSGTGKLHTY PESSNSSLEQ  60
TIQRYLNVQG IQLPVQDNRE ELFSELQALR EAIHNAEQSI RNYLGEDLGP LPLEYLHKHE  120
QKLESSLNVI RVRKNQLMQQ QMENLRRKEQ LLQTDNGNMY HWLMGGGQLQ EQQQQQLMGQ  180
MPFIYGEDQP SSSTVLQLE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-49MIKC_MADS family protein