PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62042998-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 239aa    MW: 25452.4 Da    PI: 8.8804
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62042998-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014126145120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C++C+ksF++   L  H 
  AUR62042998-RA 126 HVCTICNKSFPSGQALGGHK 145
                     79*********988776665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MALEALNSSN SPMKSDENLM MTKKKRSKRP RLDSPPSEEE YLALCLVMLA RGATSKEKXX  60
XXXXXXXRVT YKCGVCDKEF LSYQALGGHK ASHRKPAVVD GLHTTIATTA TATSSSSTST  120
GGGKSHVCTI CNKSFPSGQA LGGHKRCHYE GGISNNNNKS VSATAIITAT AAANSTVSDG  180
AAATSTVTHS RVDFDLNLPA FPDNHLTVDF DGVIKQACFD QEVESPHPSK KPRPFSLH*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-45C2H2 family protein