PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62043200-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 361aa MW: 39671.4 Da PI: 8.1111

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62043200-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.9e-07	142	182	7	44
HHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44 eE++ + +a++ + + W+++a++++ ++t +++k ++ AUR62043200-RA 142 EEEKAFENAIATHSIDesneEWDKVASMVP-TKTIEEIKQHY 182 9***********99**********.********9 PP
2	Myb_DNA-binding	40.1	8.3e-13	236	280	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky AUR62043200-RA 236 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVITRTPTQVASHAQKY 280 7***************************99**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MARPGREHWQ GVKRIFRYLR GTTDIGLVYG NGRECLVTGY SDSDYAADVD TRRSVTGYVF 60 TLGGSVVSWK STLQSSVTLS TTEAEYMALT SAAKESIWLK GLVGELGIAQ DFATVYCDSL 120 SAICLAKDQV HHDRTKHIDV REEEKAFENA IATHSIDESN EEWDKVASMV PTKTIEEIKQ 180 HYEFLVEDVG AIEAGKDQRG NSNQGNGYSP FGPSSMGNNT TKASSKLEQE RKKGIPWTEE 240 EHRLFLLGLD KFGKGDWRSI SRNFVITRTP TQVASHAQKY FIRLNSMNRD RRRSSIHDIT 300 SVNGGGLSPN QTPITGQQNN TSAAPAVGTA ALAANKHRPP PNVNMAPAVA YPLAPPPMHR 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MARPGREHWQ GVKRIFRYLR GTTDIGLVYG NGRECLVTGY SDSDYAADVD TRRSVTGYVF  60
TLGGSVVSWK STLQSSVTLS TTEAEYMALT SAAKESIWLK GLVGELGIAQ DFATVYCDSL  120
SAICLAKDQV HHDRTKHIDV REEEKAFENA IATHSIDESN EEWDKVASMV PTKTIEEIKQ  180
HYEFLVEDVG AIEAGKDQRG NSNQGNGYSP FGPSSMGNNT TKASSKLEQE RKKGIPWTEE  240
EHRLFLLGLD KFGKGDWRSI SRNFVITRTP TQVASHAQKY FIRLNSMNRD RRRSSIHDIT  300
SVNGGGLSPN QTPITGQQNN TSAAPAVGTA ALAANKHRPP PNVNMAPAVA YPLAPPPMHR  360
*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	3e-57	MYB family protein