PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62043946-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 167aa    MW: 18228.8 Da    PI: 7.8639
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62043946-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.16.7e-3447144198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaC+++r kCa+dC+lap+fpa+++++f n+ klFG++n++++l+++ +  r+dam++l y A+ara+dPv G++++i +l ++++  +++l+
  AUR62043946-RA  47 ACAACRFQRPKCAEDCPLAPHFPAHKHQQFINAYKLFGVNNIVNTLNSVAPWLRDDAMTALKYTADARAKDPVGGCARIIVSLYERIAFYNEQLE 141
                     7****************************************************************************************999998 PP

          DUF260  96 llk 98 
                      + 
  AUR62043946-RA 142 DVL 144
                     765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MPPKSNQSTT PSPQTLTTEV TVAFQNPTKS SAEISPNPIP PPPPSNACAA CRFQRPKCAE  60
DCPLAPHFPA HKHQQFINAY KLFGVNNIVN TLNSVAPWLR DDAMTALKYT ADARAKDPVG  120
GCARIIVSLY ERIAFYNEQL EDVLAQIAAV RAIAVTNDDF KFEAFR*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-33LBD family protein