PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62044546-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 229aa    MW: 25747.1 Da    PI: 10.2252
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62044546-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.11.5e-151050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ t+ kR+ g+lKK  EL +LCd++++ i++s+
  AUR62044546-RA 10 FIANDSARKATYKKRKRGLLKKMDELTTLCDVKACAILYSP 50
                    899************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MTRKKVKLAF IANDSARKAT YKKRKRGLLK KMDELTTLCD VKACAILYSP YETRPVVWPA  60
PSGAKDVIAS FKRLPEMEKV KKMVSQEEFL RQRVAKAHEQ LKKQQKDNRE KDMTHVMYQC  120
LAGAFVIVFH GSILWNFKFV VCSYYSMYGH VEKLAEEILK GAASIEGVEA KTLADGFLFG  180
FPTRFGMMAA QFKAFMDATG GLWRTQQLAG KPAGIFYSTG SQGGGQETT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFIANDSARKATYKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-49M-type_MADS family protein