PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62044774-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family GRAS
Protein Properties Length: 230aa    MW: 25594.3 Da    PI: 6.6777
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62044774-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS238.33.4e-73522674302
            GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                      ++  +al++f+ + P++kfsh+taNqaI eav+g +rvHiiD+d++qGlQWp L++ LasR+++  s+R+Tg+g+    s+e l +tg+rLa+f
  AUR62044774-RA   5 LKTFHSALQTFNSLAPFVKFSHFTANQAIFEAVHGFDRVHIIDLDVMQGLQWPGLFHILASRAKKVSSVRLTGFGP----SSELLAQTGSRLAQF 95 
                     55677899********************************************************************....99************* PP

            GRAS 169 Aeelgvpfefnvlvak..rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflea 260
                     A++lg+pf+fn++  k  ++++lel++++++ +Ea++V++++  h+l+d  +s       +L+++ +++Pk+v++v q++d  +++sFlerf+e+
  AUR62044774-RA  96 AASLGLPFKFNPVEGKfgDMSELELSRIDFRANEATVVHCMH--HKLYDIIGSNFG----LLRVLSTVKPKLVTMVTQNIDIfETGSFLERFIET 184
                     ************966566999********************9..999966666666....*********************************** PP

            GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                     l+yysa+fd+l ++l+r++  r+ vE++l+g ei+n++ac  
  AUR62044774-RA 185 LHYYSAMFDALGEGLSRDNVLRHQVEQQLFGSEIRNILACDD 226
                     ****************************************75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
LSSQLKTFHS ALQTFNSLAP FVKFSHFTAN QAIFEAVHGF DRVHIIDLDV MQGLQWPGLF  60
HILASRAKKV SSVRLTGFGP SSELLAQTGS RLAQFAASLG LPFKFNPVEG KFGDMSELEL  120
SRIDFRANEA TVVHCMHHKL YDIIGSNFGL LRVLSTVKPK LVTMVTQNID IFETGSFLER  180
FIETLHYYSA MFDALGEGLS RDNVLRHQVE QQLFGSEIRN ILACDDVDG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.14e-91GRAS family protein