PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0035s0057.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family ARR-B
Protein Properties Length: 523aa    MW: 55743.2 Da    PI: 6.1994
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0035s0057.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like911.1e-28199252155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ e+H++Fv+av+qL G++kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Bobra.0035s0057.1.p 199 KPRVVWSVEMHQQFVQAVNQL-GIDKAVPKRILDLMNVEGLTRENVASHLQKYRL 252
                          79*******************.********************************8 PP
2Myb_DNA-binding35.81.8e-11201251148
                          TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                          r  W+ e ++++v+av+qlG +   +k+I   m+ +g+t++++ s++qky+
  Bobra.0035s0057.1.p 201 RVVWSVEMHQQFVQAVNQLGIDkaVPKRILDLMNvEGLTRENVASHLQKYR 251
                          678***********************************************7 PP
3Response_reg88.51.9e-29361441109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+pl +++++  l++ +y ev+++ +g++al+ll++k+  +Dl+l D+ mp+mdG++ll++i  e  +lp+i+++++ge + +l+
  Bobra.0035s0057.1.p  36 VLVVDDDPLCLKIVEHQLRRCRY-EVTTCPNGKKALDLLRDKTshFDLVLSDVYMPDMDGFKLLEHIGLEL-DLPVIMMSSNGETSVVLR 123
                          89*********************.***************777777**********************5544.6***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga dfl Kp+  eel++
  Bobra.0035s0057.1.p 124 GVTHGAVDFLIKPVRVEELRN 144
                          ******************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    
MSMLSRPQLK TEGSGPGSGP QAQQDSYHQF PAGLKVLVVD DDPLCLKIVE HQLRRCRYEV  60
TTCPNGKKAL DLLRDKTSHF DLVLSDVYMP DMDGFKLLEH IGLELDLPVI MMSSNGETSV  120
VLRGVTHGAV DFLIKPVRVE ELRNVWQHVV RRSSTRVKDP MVLGIKGEGE DDESVSDSRQ  180
DKKRKEPRRD SEDGNATKKP RVVWSVEMHQ QFVQAVNQLG IDKAVPKRIL DLMNVEGLTR  240
ENVASHLQKY RLYLKRLSGV NSGLSRNKSG KFQPDLSFQA LMAGNPGFPA VQYVAPGAPP  300
GMLGMADMSS LSPLQGMGPT AQGLPSLGPG HPLGGTPGLA SQLSNMVMPG AAPDFLPYGA  360
PGHTGLPAQA QAQSTAQAQM AGFEGRLAGV GSLTGQNSGG FPQLGINHYG MSGESGMGPG  420
ALDVDWNLGN NREVMQEGSG PLGLPVPHNS GRGMTTGYVE GRPPGVNFPL GAGGLAESEL  480
LGMSHQESGG AVPLGMPSQT DGKSEGFDDF VNLMFQVPDL NE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-94ARR-B family protein