PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0038s0080.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family AP2
Protein Properties Length: 244aa    MW: 27517.2 Da    PI: 10.0525
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0038s0080.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2249.5e-08754153
                  AP2  1 sgykGVrwdkkrgr.WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                         +++kGV+ + + g+ W A I +      +k+fs+g + ta+eAa +  + r kl
  Bobra.0038s0080.1.p  7 PHFKGVFSRTR-GStWTANIVVQ-----KKSFSIGLHQTADEAAHMLNRVRYKL 54
                         689***87775.666****9992.....5***************9877776665 PP
2AP242.61.5e-13169218155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++++W+A+Ir       r ++ lg+f t+e+Aaka+++   +l g
  Bobra.0038s0080.1.p 169 SEYRGVSFYRSTNKWRAQIRSD-----RVSYCLGYFKTEEQAAKAYDKKLIELGG 218
                          569******************4.....5********************9988865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MAYLPHPHFK GVFSRTRGST WTANIVVQKK SFSIGLHQTA DEAAHMLNRV RYKLGRKVET  60
PLEENEMNEL DALASWQDAL PKYAHKLMIP VKNKAGYRGV YRASTGRGRW YAQAQINGLK  120
KHLGVFTSKE AAGWAYNQHL LTHGGRVELL NDIDKPPPDF PSTSSEKTSE YRGVSFYRST  180
NKWRAQIRSD RVSYCLGYFK TEEQAAKAYD KKLIELGGSL DKLNFKPADG TLGHLDTDPD  240
QKL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.16e-08ERF family protein