PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0058s0069.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family AP2
Protein Properties Length: 164aa    MW: 18582.7 Da    PI: 7.9499
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0058s0069.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-174797154
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         s+y+GV+ ++ +grW+A+I  + e g +++ +lg+f+ +e+Aa+a+++a+++++
  Bobra.0058s0069.1.p 47 SKYRGVTKHHHQGRWEARIGRV-E-G-NRYLYLGTFDNEEDAARAYDRAALQYR 97
                         89****************9994.2.2.5***********************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MIFGGAAHAQ FDRAIYQKIE SELQGMQREH VVSSLKRNST GFARGQSKYR GVTKHHHQGR  60
WEARIGRVEG NRYLYLGTFD NEEDAARAYD RAALQYRRDK AVTNFSVSDY LDDTLEPTTF  120
DVETPPDSPG TTKHGKEHPE SAIRPPLIPP LNVIQLTPII FQW*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.24e-29ERF family protein