PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0059s0094.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family MYB_related
Protein Properties Length: 345aa    MW: 37072.2 Da    PI: 10.8769
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0059s0094.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.51e-10290337347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          rWT+eE  ll ++v  +G g Wk+I +  g   + Rt+ ++k++w+++
  Bobra.0059s0094.1.p 290 RWTPEETHLLTRLVDAHGVGKWKSIKEAGGaafEYRTEVDLKDKWRNL 337
                          8************************99999****************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MLAGGRCRLP EPHRGGPEGQ VAQSGEGEDG AQSCPAPGTF LGAGGSTQGW TCWRISSTLR  60
GPTATYATTR PRRRVPCGTP PWGLGLSKGA RKAKKRFYSQ KCPEEEETGI SRTCLKGRQG  120
RGEFLGPLGP LVGTRACSMA RWGTRACSMA WWGTRACSMA MWGRRACSIV PVGGTSACLM  180
SRCRTRACSM GTQAEKARWC RSVLGDQDWA SRQRRLELLK TARAAGTSPG TTGLAGVSEE  240
LPAVAESGDS LDGAQAGAVV EYRGRPPSPG RQPHLGVQGA LTKRRRKAHR WTPEETHLLT  300
RLVDAHGVGK WKSIKEAGGA AFEYRTEVDL KDKWRNLNRH STGK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283312KRRRKAHRWTPEETHLLTRLVDAHGVGKWK
2284313KRRRKAHRWTPEETHLLTRLVDAHGVGKWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.11e-10MYB_related family protein