PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0142s0081.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

C2H2

Protein Properties

Length: 1009aa MW: 108661 Da PI: 6.8439

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0142s0081.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.4e-05	182	202	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 Cp+C+++F++ + ++ H+++H Bobra.0142s0081.1.p 182 CPHCPRVFKQLERYREHLKKH 202 ********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1009 aa Download sequence
MRPEGVKPLA IPPDDPPPVS PQPRDSRVVS PHLYRAQQDF VESASCRSVG PMDKASAYGA 60 EDSRGKLPSD RHDPGCVIFI DMVQLEQVLD RFPDVYGTEL LQPAAAWGAH RGPYLEGVET 120 RPSAMERPLR ESGSGGERYD GCMGKIKNLE EKKKAARVFS SGSGGGTKGP SVVDKRNQEL 180 ACPHCPRVFK QLERYREHLK KHAGEEDAGD DEGPSGVPPG PPGGPDASTS AGPAPAGPAT 240 RPPVPASAPG LAQAGKMMDV GAKAGYYTEK SPKMMLQEWC TQQKRARPRY VLQKLDGGVF 300 GCKVVLPDPK DKEKDVVVFL PKEEGVSDET LAEQQGAVAA LRRVQGDRAL HRVLPLVFRG 360 LWERLGLKEQ AEAERRARIA EMAEAKRERE RARREREARR APAAVVMSET QRRMVESVLR 420 DLRGPGTAQG PGDRSLSGDV EAIRERALEL GFEEDDVAEA IANIGAAEGL EGVLDWLCVH 480 VEESHLPTAF KHGGASKPVA LVSKTGSSGR LASAEAQGDP ALAVLLSCGY PRSLAVSALQ 540 ACSGNQEAAL ALVFNHLCGM FSINSGLGQD DVAEPVAEPM AEDMQVNEAW EEEKEALCAI 600 YSGDLCLHSQ SHGSLCLSHD EGFEPLQLDF RIGSAYPMAV PLISVRCEGL PSASLLDLTK 660 TLAEVAAATI GSPMVYELAT TALQRLPALV SEPPRYFPLP SLAPSGSRVD LQIDRPDSIS 720 GSGADDPKPD QAGPASAAAG RRERPRNKRG FDAVTESRLL QEEAERWRAS GRGRSMRGQR 780 ERLPASSKRP DLVSEVNRRR VLVISGATGC GKSTQVPQYL LEEAVGRGEG GACNIIVTQP 840 RRISAVGLAS RVAEEMGQRV GEVVGYSVRL DSCTSLRTRL LFCTTGILLR RLTSDPELSN 900 VTHVIVDEVH ERSVESDLLL LLLRRLLASP AGKHLKVVLM SATADANLFA SYFSSALGHG 960 AVGTLNIPGF THPVKDLYLE DVLEVTRHVI GRGSRYISTK SKKKYVLN*

Sequence ? help Back to Top

Protein Sequence Length: 1009 aa Download sequence

MRPEGVKPLA IPPDDPPPVS PQPRDSRVVS PHLYRAQQDF VESASCRSVG PMDKASAYGA  60
EDSRGKLPSD RHDPGCVIFI DMVQLEQVLD RFPDVYGTEL LQPAAAWGAH RGPYLEGVET  120
RPSAMERPLR ESGSGGERYD GCMGKIKNLE EKKKAARVFS SGSGGGTKGP SVVDKRNQEL  180
ACPHCPRVFK QLERYREHLK KHAGEEDAGD DEGPSGVPPG PPGGPDASTS AGPAPAGPAT  240
RPPVPASAPG LAQAGKMMDV GAKAGYYTEK SPKMMLQEWC TQQKRARPRY VLQKLDGGVF  300
GCKVVLPDPK DKEKDVVVFL PKEEGVSDET LAEQQGAVAA LRRVQGDRAL HRVLPLVFRG  360
LWERLGLKEQ AEAERRARIA EMAEAKRERE RARREREARR APAAVVMSET QRRMVESVLR  420
DLRGPGTAQG PGDRSLSGDV EAIRERALEL GFEEDDVAEA IANIGAAEGL EGVLDWLCVH  480
VEESHLPTAF KHGGASKPVA LVSKTGSSGR LASAEAQGDP ALAVLLSCGY PRSLAVSALQ  540
ACSGNQEAAL ALVFNHLCGM FSINSGLGQD DVAEPVAEPM AEDMQVNEAW EEEKEALCAI  600
YSGDLCLHSQ SHGSLCLSHD EGFEPLQLDF RIGSAYPMAV PLISVRCEGL PSASLLDLTK  660
TLAEVAAATI GSPMVYELAT TALQRLPALV SEPPRYFPLP SLAPSGSRVD LQIDRPDSIS  720
GSGADDPKPD QAGPASAAAG RRERPRNKRG FDAVTESRLL QEEAERWRAS GRGRSMRGQR  780
ERLPASSKRP DLVSEVNRRR VLVISGATGC GKSTQVPQYL LEEAVGRGEG GACNIIVTQP  840
RRISAVGLAS RVAEEMGQRV GEVVGYSVRL DSCTSLRTRL LFCTTGILLR RLTSDPELSN  900
VTHVIVDEVH ERSVESDLLL LLLRRLLASP AGKHLKVVLM SATADANLFA SYFSSALGHG  960
AVGTLNIPGF THPVKDLYLE DVLEVTRHVI GRGSRYISTK SKKKYVLN*