PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0142s0102.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family MYB_related
Protein Properties Length: 412aa    MW: 46415.3 Da    PI: 4.817
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0142s0102.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.6e-121262146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                         +++WT+eE+e l  +v+++G g W+ I r          R+  ++k++w++
  Bobra.0142s0102.1.p 12 KQKWTPEEEEALRAGVTKYGAGKWRHIQRDPLfdqvlRQRSNVDLKDKWRN 62
                         79*****************************9*****99***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    
MKKGSAKPGA TKQKWTPEEE EALRAGVTKY GAGKWRHIQR DPLFDQVLRQ RSNVDLKDKW  60
RNMNMETSTS REKHRRVSRG RGGNDRRTTG TYRKRRRKSD PETDHRQGLM VLGEAAAAEQ  120
VNEGERPRRR ISKKPALLKD FTMGGDSTEE EEEANGSRED NLEEEGEELS GEEHEGELLP  180
EEEEEEEEEE EMEEEEEEEE EEEEGEGLMH DDQEVDMRVR EHRQPRVDRP MAINFPMHQG  240
VASASRREEP PSRERTSPLE AKVIAALILR QDEMGSTLAE IVETIDPQPG PRDGATAESL  300
KDEVYKILEY LVEKKQLMLA SPSSDRYVIA GALARSAMRG NLWPPLSEPM DPRYNSKTAA  360
QAAKDAALAV ARAEEAATHA KLAVRIYKSL RDPRSSSSVG KSSSVVKTSD S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19397RKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.11e-20MYB_related family protein