PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0157s0025.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family Whirly
Protein Properties Length: 241aa    MW: 26572.7 Da    PI: 10.3628
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0157s0025.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly81.41.3e-25652032135
               Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanat.......aerkydWekkqsfalsatevaelvdlaskesceffhdpaakg 84 
                          ++k+ aa++ k++ p ++++dsg +++kr+G+l le+a  +       +er+y W++kq f+ls+ e+++l+     + ++ +hdp +++
  Bobra.0157s0025.1.p  65 LHKGSAAVTFKPIPPIWSDIDSGDFVIKRQGALQLEFASVMpglgnrpGERRYAWQQKQIFTLSPLELGSLLVARDFGMADIYHDPNKGT 154
                          589*********************************98543333333389*********************9999999************ PP

               Whirly  85 sneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlr 135
                          ++eG++rk+l+ + l+d   + + lsv+ +       f vP+s +e   ++
  Bobra.0157s0025.1.p 155 GEEGQIRKVLSYKRLADNVNFALRLSVKAD--DKTLVFDVPISPGEHETVK 203
                          ******************999999999988..556789*******987665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MRGFPNKGTV WQISRGLSCG TLPNKRGYRN TMPARLARSV TLRLYQSGSE LRPTASPKYF  60
TKFCLHKGSA AVTFKPIPPI WSDIDSGDFV IKRQGALQLE FASVMPGLGN RPGERRYAWQ  120
QKQIFTLSPL ELGSLLVARD FGMADIYHDP NKGTGEEGQI RKVLSYKRLA DNVNFALRLS  180
VKADDKTLVF DVPISPGEHE TVKLVGQYLI PYLLGMNMAL GIPSESRPQS ASVVSGFIPL  240
*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.14e-30Whirly family protein