PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0187s0018.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

C2H2

Protein Properties

Length: 796aa MW: 85385.7 Da PI: 4.5868

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0187s0018.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00086	295	318	2	23
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 Cp C+k+F++ + +H r+ H Bobra.0187s0018.1.p 295 YCPACDKVFRSEGAYANHERSkkH 318 5*****************998666 PP

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence
MRCFYEVLGV ERDADDNTIK TAYRKAALSW HPDKNLHRVE EATERFQEIR EAFDVLSDPR 60 ERAWYDKNRG SFLRTNRGGY GGGRSASTQE ADNVSDDDDI DLFPYFSTKC FSGYGDGANG 120 FYGVYERVFK EIWEAEVLAC KQASKEAPAQ PPSFGTAEMV YTEVEAFYKF WTSFQTVKEM 180 RHAEAYPSSC APNRWARKKF SAENAKRRNA ARKEFNENVR ELAKFVKRRD KRVAAYKAQQ 240 AQLRAEKEQA ELLRRQKEAA EKAERARAFR VAAWAQQEQE EESADEEEEF VDQLYCPACD 300 KVFRSEGAYA NHERSKKHLE NVKALRAALA QEEAAAGSGG GSRETTGQEG AAGPLREGGP 360 SSGTRNGPET HNGRDAAAAR PDSGAAASAV TGPSGQDSGP GHVGLRGKSR GGGGGGQPDV 420 RPTRRDGGTG PLEEARRKAD GGASPSLGGR APQEARTLAG GKSRRPGAGP REGRGGEEGA 480 EEDEGKGEDE EEESEGEDED EEEEGEGEDE DAFLQRMMKL QTGRTHVDDE DEEEEEEEEE 540 EEKKGGGVEG REGDATCRGG LSRRGGGGEE PVVPVSDYSD KDLEEEEEED PGEEFGEDDL 600 LQRLINSQQA RARGVRESDE EDEEEGDEEA GAETREDGWP ERQDTDDGTR TRDGDEGPGE 660 GQGSASVPGT RISEPASHEA DGGGSSADHG GEDGGAEAKG KGRRRGKKGG KEAQATSAAG 720 NSGQAAAPHA KGAGGRGAAA APRTAKAGRK AAAATGAGAG GAENATVCGV CGLDCRTRNR 780 LFKHLAATGH AVFRA*

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence

MRCFYEVLGV ERDADDNTIK TAYRKAALSW HPDKNLHRVE EATERFQEIR EAFDVLSDPR  60
ERAWYDKNRG SFLRTNRGGY GGGRSASTQE ADNVSDDDDI DLFPYFSTKC FSGYGDGANG  120
FYGVYERVFK EIWEAEVLAC KQASKEAPAQ PPSFGTAEMV YTEVEAFYKF WTSFQTVKEM  180
RHAEAYPSSC APNRWARKKF SAENAKRRNA ARKEFNENVR ELAKFVKRRD KRVAAYKAQQ  240
AQLRAEKEQA ELLRRQKEAA EKAERARAFR VAAWAQQEQE EESADEEEEF VDQLYCPACD  300
KVFRSEGAYA NHERSKKHLE NVKALRAALA QEEAAAGSGG GSRETTGQEG AAGPLREGGP  360
SSGTRNGPET HNGRDAAAAR PDSGAAASAV TGPSGQDSGP GHVGLRGKSR GGGGGGQPDV  420
RPTRRDGGTG PLEEARRKAD GGASPSLGGR APQEARTLAG GKSRRPGAGP REGRGGEEGA  480
EEDEGKGEDE EEESEGEDED EEEEGEGEDE DAFLQRMMKL QTGRTHVDDE DEEEEEEEEE  540
EEKKGGGVEG REGDATCRGG LSRRGGGGEE PVVPVSDYSD KDLEEEEEED PGEEFGEDDL  600
LQRLINSQQA RARGVRESDE EDEEEGDEEA GAETREDGWP ERQDTDDGTR TRDGDEGPGE  660
GQGSASVPGT RISEPASHEA DGGGSSADHG GEDGGAEAKG KGRRRGKKGG KEAQATSAAG  720
NSGQAAAPHA KGAGGRGAAA APRTAKAGRK AAAATGAGAG GAENATVCGV CGLDCRTRNR  780
LFKHLAATGH AVFRA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-38	C2H2 family protein