PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0217s0045.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family NF-YC
Protein Properties Length: 224aa    MW: 24557.4 Da    PI: 4.889
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0217s0045.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC148.91e-4640145199
                NF-YC   1 qlksfwekq.......iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 
                          ql++fw++q         + ++fkn++lPl+rikki+k+dedv+misaeaP l+ska e+fileltlr+w hae+nkrrtl+k+di++a+
  Bobra.0217s0045.1.p  40 QLRQFWQTQmsdiqktSTDPAEFKNQNLPLTRIKKIMKSDEDVRMISAEAPLLFSKASEIFILELTLRAWSHAESNKRRTLQKNDIDSAI 129
                          89*******5553222223358******************************************************************** PP

                NF-YC  84 trtdifdflvdivprd 99 
                          t+tdifdflvdiv +d
  Bobra.0217s0045.1.p 130 TNTDIFDFLVDIVTTD 145
                          *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MQNRPGAIPS SSSTMASHYS TPHGGYAAPP MEHTTQIDSQ LRQFWQTQMS DIQKTSTDPA  60
EFKNQNLPLT RIKKIMKSDE DVRMISAEAP LLFSKASEIF ILELTLRAWS HAESNKRRTL  120
QKNDIDSAIT NTDIFDFLVD IVTTDNPAGA PGVEGAPNGA REAFQYPGQM PTMATMQSMN  180
DMSGMPGAHL RHDPQHVEYG YAMPDGSLQI KVDVQDGDGN GTE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.32e-48NF-YC family protein