PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0217s0045.4.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family NF-YC
Protein Properties Length: 200aa    MW: 22152.9 Da    PI: 4.7244
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0217s0045.4.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC149.37.6e-4726131199
                NF-YC   1 qlksfwekq.......iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 
                          ql++fw++q         + ++fkn++lPl+rikki+k+dedv+misaeaP l+ska e+fileltlr+w hae+nkrrtl+k+di++a+
  Bobra.0217s0045.4.p  26 QLRQFWQTQmsdiqktSTDPAEFKNQNLPLTRIKKIMKSDEDVRMISAEAPLLFSKASEIFILELTLRAWSHAESNKRRTLQKNDIDSAI 115
                          89*******5553222223358******************************************************************** PP

                NF-YC  84 trtdifdflvdivprd 99 
                          t+tdifdflvdiv +d
  Bobra.0217s0045.4.p 116 TNTDIFDFLVDIVTTD 131
                          *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MASHYSTPHG GYAAPPMEHT TQIDSQLRQF WQTQMSDIQK TSTDPAEFKN QNLPLTRIKK  60
IMKSDEDVRM ISAEAPLLFS KASEIFILEL TLRAWSHAES NKRRTLQKND IDSAITNTDI  120
FDFLVDIVTT DNPAGAPGVE GAPNGAREAF QYPGQMPTMA TMQSMNDMSG MPGIESREVA  180
EMNSGGRVTI YNLYNMVVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103109RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.32e-48NF-YC family protein