PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0229s0027.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family Nin-like
Protein Properties Length: 262aa    MW: 29399.1 Da    PI: 9.5742
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0229s0027.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK88.36.6e-28134184252
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          +k++s+++ls+yF++pi +A+ke+++c+TvLK+iCR++G++RWPhRk++s+
  Bobra.0229s0027.1.p 134 KKRLSFKELSQYFHMPIDAASKEMNICPTVLKKICRHHGLPRWPHRKLRSI 184
                          689*********************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MGSIWASLPD VRPGSCFAQQ KACNASLISP FPFLGTLSGA QLRGGLVLKK AQGKGFLVEV  60
LVHNSYSCNG NMFKLSFSFT KESYSLLHTA MASFLHHVGQ TTSLGNFPIQ HGRGHSFFGN  120
NVRGNEDDEQ THLKKRLSFK ELSQYFHMPI DAASKEMNIC PTVLKKICRH HGLPRWPHRK  180
LRSIDRLSNR LKVYLGESKA QECPVTLLCH NVEGWYFFSI GCFIAVVVML MYVRRLNEKL  240
GDFIYIPFAK GVHVEDGLYC P*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.12e-16Nin-like family protein