PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0260s0010.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family LSD
Protein Properties Length: 189aa    MW: 19898 Da    PI: 8.0011
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0260s0010.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD131.82.3e-102145125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         C++C ++L +P GA++VRCa C ++
  Bobra.0260s0010.1.p 21 CSSCNIMLKFPQGASNVRCAKCGHI 45
                         **********************997 PP
2zf-LSD138.61.8e-126186225
              zf-LSD1  2 g..gCrtlLsYPrGApsVRCalCdtV 25
                         +  +Cr +L+YPrGA  V+C+lC+t+
  Bobra.0260s0010.1.p 61 SgqNCRMVLMYPRGAQQVQCSLCHTM 86
                         5458********************96 PP
3zf-LSD132.21.7e-10100122123
              zf-LSD1   1 CggCrtlLsYPrGApsVRCalCd 23 
                          C +Crt+L+Y  GA+ V+Ca+C+
  Bobra.0260s0010.1.p 100 CDSCRTMLMYAHGASTVKCAVCN 122
                          **********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MQPYGQLQTS QPEGPTSTLV CSSCNIMLKF PQGASNVRCA KCGHINKTAP GGDMMAQLVC  60
SGQNCRMVLM YPRGAQQVQC SLCHTMNDPQ LIQAIGYLHC DSCRTMLMYA HGASTVKCAV  120
CNYLTAVKPG SLPGPQIGYD TTMMSATGTA GTVPMMASYS TADMSGLPTV SPMRNSMDHS  180
SGTLPPVQ*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.36e-30LSD family protein