PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0322s0015.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

MYB_related

Protein Properties

Length: 670aa MW: 69665.7 Da PI: 10.6073

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0322s0015.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37	7.9e-12	546	591	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 WT+eE ll+++++++G g+W++I r +Rt+ ++k+rw+ ++ Bobra.0322s0015.1.p 546 WTEEETRLLLEGIERHGLGSWEAIYRGARfANRTAVDLKDRWRVLR 591 ******************************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence
MALGVEHAPQ RSSPGEGEAS GPSQRTRSRT ETTERTGRAD RRAAKRQKHT RAAAEPIGSS 60 PGGPQNLAPA GGSPQGPGRN GDRGGTAPDN DPPVQGQPPG DPRPRPIGQP RVVPLPVTHM 120 GPYPNTGAAA PPAPPGGRPA EPGRVWEASC SHAPADEIED KGLLRVAPFA NAKQDALLPR 180 GFYFTRDPTV RQLKQAVLQS KEVRKLPCAR TLDCLLWARV PGKARGQSLL EFKQGAEQRL 240 SNYGIVVRGD PHDIWVTWGS LSSTAQERVA VDAVERSVAP RERASAVNPA ADRAQRAALD 300 LLNAPSPNPP VRITSPRAGI GSLSGSAAPA TRPRPPVLLP QARAGPPGSP PGPLPAPQRR 360 PLVSLPQGPA VPPGSGPSER DAPLDLPGSG QSELPPADAL QPHPESRHRP GLSPQHAGPS 420 RRFPGPPAVT PGSAEVMVLF PATVPAAGPR GGPAAQTPEP ASGSRTTAGA AGQRQSGETA 480 GGEGQAEEGA GSPRGAAAAG TPPGQEVGAR PAAEQLRERD PFAMSPTPPP RPQEGGRGRR 540 RPRAIWTEEE TRLLLEGIER HGLGSWEAIY RGARFANRTA VDLKDRWRVL RNQMRPGVKP 600 RRDPLPPDLF ARVCRLCHYT HDGRLGDLGE AAGGSGPGGR GTGGGGEEGG QGGVERGDEA 660 GEEDDISSV*

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence

MALGVEHAPQ RSSPGEGEAS GPSQRTRSRT ETTERTGRAD RRAAKRQKHT RAAAEPIGSS  60
PGGPQNLAPA GGSPQGPGRN GDRGGTAPDN DPPVQGQPPG DPRPRPIGQP RVVPLPVTHM  120
GPYPNTGAAA PPAPPGGRPA EPGRVWEASC SHAPADEIED KGLLRVAPFA NAKQDALLPR  180
GFYFTRDPTV RQLKQAVLQS KEVRKLPCAR TLDCLLWARV PGKARGQSLL EFKQGAEQRL  240
SNYGIVVRGD PHDIWVTWGS LSSTAQERVA VDAVERSVAP RERASAVNPA ADRAQRAALD  300
LLNAPSPNPP VRITSPRAGI GSLSGSAAPA TRPRPPVLLP QARAGPPGSP PGPLPAPQRR  360
PLVSLPQGPA VPPGSGPSER DAPLDLPGSG QSELPPADAL QPHPESRHRP GLSPQHAGPS  420
RRFPGPPAVT PGSAEVMVLF PATVPAAGPR GGPAAQTPEP ASGSRTTAGA AGQRQSGETA  480
GGEGQAEEGA GSPRGAAAAG TPPGQEVGAR PAAEQLRERD PFAMSPTPPP RPQEGGRGRR  540
RPRAIWTEEE TRLLLEGIER HGLGSWEAIY RGARFANRTA VDLKDRWRVL RNQMRPGVKP  600
RRDPLPPDLF ARVCRLCHYT HDGRLGDLGE AAGGSGPGGR GTGGGGEEGG QGGVERGDEA  660
GEEDDISSV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	638	646	GGRGTGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	3e-08	MYB_related family protein