PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0338s0012.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

Nin-like

Protein Properties

Length: 585aa MW: 63943.6 Da PI: 7.1244

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0338s0012.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	74.6	1.2e-23	368	416	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ++++edl+++F+ ++dAA+ L++c+T+LKr+CR++GI+RWP+R+i++ Bobra.0338s0012.1.p 368 RRLTFEDLQACFAYGLRDAASRLNICPTTLKRACRRHGIHRWPRRQIAK 416 589********************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MDSVTGPMQT LALPPTLASK LTPVLQEICI RHTGSSGALV QVWMPVRGCE GAAVLRTQGL 60 PFNVSGVADL LAMFRCCSCK YTFCTDVHKP ELMGAVGRVY VSGQPEFSND VQQYDRTIYL 120 RLQDALRCRV HSSIFMPLYD NELRHRPIAV FEACKGDNAD FPGIIDALSM ALKSLNLFTV 180 DLPGLSVGLR SRIWMNESQG LAVRGHVPAA RLMQEIGGTV DQGAAHSPVL VQGLANGGLV 240 SNELWKPPQK PCRKRPSLEP MRSSCPTLSQ STVQVDDDYY KACQLDVLHQ DRAAWESAQI 300 ARTNGGAHSG LDHAAALRRE EGTEVASAHS MPHSELHLQG EESRPDSDSI TPEERPEINN 360 RIGGGAGRRL TFEDLQACFA YGLRDAASRL NICPTTLKRA CRRHGIHRWP RRQIAKQERR 420 MGNAAASNRS VDRSGMTGDS VSSQSGRREH GTSIISQREA EGVERSNPTS EPQLHAQAIG 480 AESHWQQHAE ESLSAAGWEI PTFGIQLMDG FQGSLQGLPP VSGALAMQPS MASPALSRPL 540 QQQDCMLYIP NMSFPMCSTY PDVFQNGSVD PMVVHDMFKL VRLF*

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MDSVTGPMQT LALPPTLASK LTPVLQEICI RHTGSSGALV QVWMPVRGCE GAAVLRTQGL  60
PFNVSGVADL LAMFRCCSCK YTFCTDVHKP ELMGAVGRVY VSGQPEFSND VQQYDRTIYL  120
RLQDALRCRV HSSIFMPLYD NELRHRPIAV FEACKGDNAD FPGIIDALSM ALKSLNLFTV  180
DLPGLSVGLR SRIWMNESQG LAVRGHVPAA RLMQEIGGTV DQGAAHSPVL VQGLANGGLV  240
SNELWKPPQK PCRKRPSLEP MRSSCPTLSQ STVQVDDDYY KACQLDVLHQ DRAAWESAQI  300
ARTNGGAHSG LDHAAALRRE EGTEVASAHS MPHSELHLQG EESRPDSDSI TPEERPEINN  360
RIGGGAGRRL TFEDLQACFA YGLRDAASRL NICPTTLKRA CRRHGIHRWP RRQIAKQERR  420
MGNAAASNRS VDRSGMTGDS VSSQSGRREH GTSIISQREA EGVERSNPTS EPQLHAQAIG  480
AESHWQQHAE ESLSAAGWEI PTFGIQLMDG FQGSLQGLPP VSGALAMQPS MASPALSRPL  540
QQQDCMLYIP NMSFPMCSTY PDVFQNGSVD PMVVHDMFKL VRLF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-12	Nin-like family protein