PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0355s0007.2.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

GATA

Protein Properties

Length: 604aa MW: 65421.5 Da PI: 5.2435

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0355s0007.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	57.8	1.5e-18	345	377	1	33
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C nC+t+kTp+WR+gp g++tLCnaCGl++rk Bobra.0355s0007.2.p 345 CYNCKTKKTPQWRNGPHGERTLCNACGLKFRKG 377 *******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence
MDAYHSQTGG RSRMPSIFET LYPGISSSQA QGINSTCQVP EAYKAEVLGP AGACFGGHEA 60 LDMANNDLIP DSLLVYGEQQ AWRISTQQDA QPSYPPMLEQ VSAQNGCLDG WRPVRECIAP 120 VPLSPVSDAK CLLSIRDETV YPASPGYHQG TGQDHQSIFT SENNFTATIN VAFNSHTPQY 180 LGHGQFPQMS PEYQGFLSEE HGCGQPDLYL AEPQYPELPR LELVVETRQL EMYHSRQDPF 240 QAQSIQDEFL DDMIAGDIDK FLKECTRPAD DVHVFHVEAG NPMHAEPASR AGSAHQADGG 300 QQRGRRPRFQ NLSSTNPKSQ PKNRAKGNNS SKSGGAFKRT QRSFCYNCKT KKTPQWRNGP 360 HGERTLCNAC GLKFRKGALE RCEYYEVHIL NSDPTKPAPP PASGGGGPSG GRQKGDDTTK 420 QPTANCPSLL SFGSLDTQQA QCFASGANDL RACSIDHPEQ VPRNVNLLCE DEVASKECED 480 PATSNSPASL EEQHRMEFSV DRILQTACPT NNASCPTAAG EHVEIPGMQI TADYCQIEEA 540 MGAASAVDHR MGKASVPVFR QDLGAALPTA SVKAFPCGAT ASAGIYQSGP GQEFQQDLST 600 VYV*

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence

MDAYHSQTGG RSRMPSIFET LYPGISSSQA QGINSTCQVP EAYKAEVLGP AGACFGGHEA  60
LDMANNDLIP DSLLVYGEQQ AWRISTQQDA QPSYPPMLEQ VSAQNGCLDG WRPVRECIAP  120
VPLSPVSDAK CLLSIRDETV YPASPGYHQG TGQDHQSIFT SENNFTATIN VAFNSHTPQY  180
LGHGQFPQMS PEYQGFLSEE HGCGQPDLYL AEPQYPELPR LELVVETRQL EMYHSRQDPF  240
QAQSIQDEFL DDMIAGDIDK FLKECTRPAD DVHVFHVEAG NPMHAEPASR AGSAHQADGG  300
QQRGRRPRFQ NLSSTNPKSQ PKNRAKGNNS SKSGGAFKRT QRSFCYNCKT KKTPQWRNGP  360
HGERTLCNAC GLKFRKGALE RCEYYEVHIL NSDPTKPAPP PASGGGGPSG GRQKGDDTTK  420
QPTANCPSLL SFGSLDTQQA QCFASGANDL RACSIDHPEQ VPRNVNLLCE DEVASKECED  480
PATSNSPASL EEQHRMEFSV DRILQTACPT NNASCPTAAG EHVEIPGMQI TADYCQIEEA  540
MGAASAVDHR MGKASVPVFR QDLGAALPTA SVKAFPCGAT ASAGIYQSGP GQEFQQDLST  600
VYV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	338	352	KRTQRSFCYNCKTKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	3e-12	GATA family protein